{"id":"W1982325415","doi":"10.1371/journal.pone.0122450","title":"Regulation of Coronafacoyl Phytotoxin Production by the PAS-LuxR Family Regulator CfaR in the Common Scab Pathogen Streptomyces scabies","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phytotoxin; Biology; Common scab; Gene cluster; Virulence; Gene; Streptomyces; Genetics; Regulator gene; Microbiology; Regulation of gene expression; Toxin; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001611032,0.0003686323,0.0004461297,0.000162547,0.0001415754,0.0002787726,0.0001169876,0.0002504944,0.0008576452],"category_scores_gemma":[0.000176439,0.0001631536,0.0002966913,0.00009346107,0.0002282763,0.0001311005,0.0003455138,0.0004243633,0.0006165739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003151703,"about_ca_system_score_gemma":0.0001598637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001079808,"about_ca_topic_score_gemma":0.0009508699,"domain_scores_codex":[0.9997947,0.00004285709,0.00001721535,0.00005481494,0.00005136537,0.00003911803],"domain_scores_gemma":[0.9998585,0.00003872827,0.00003748539,0.00001435163,0.00001787038,0.00003304914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003091815,0.00001330372,0.0001375426,0.00001000101,8.162185e-7,0.00002406673,0.000008113591,0.00002322009,0.999481,0.00001584651,0.00001190404,0.0002433358],"study_design_scores_gemma":[0.00004687952,0.0003261786,0.02735429,0.00001071008,0.00001224461,0.0003902853,0.0001138111,0.006151214,0.964254,0.00007100713,0.001251633,0.00001754836],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955781,0.0008058604,0.002406233,0.0001006625,0.00002434521,0.0000197576,0.0002451069,0.0001025621,0.0007172863],"genre_scores_gemma":[0.9960645,0.0002467141,0.001910943,0.00005294559,0.000008729748,0.00002253854,0.0003814609,0.00002467737,0.001287518],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001079808,"threshold_uncertainty_score":0.002869129,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06362974701307389,"score_gpt":0.210528602261638,"score_spread":0.1468988552485641,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}