{"id":"W1982474852","doi":"10.1371/journal.pone.0093287","title":"Reference Gene Selection for Gene Expression Analysis of Oocytes Collected from Dairy Cattle and Buffaloes during Winter and Summer","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo; American Physical Therapy Association","keywords":"Reference genes; Biology; SDHA; Gene; Gene expression; Gene expression profiling; Genetics; Dairy cattle; Normalization (sociology); Real-time polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004919327,0.00008074581,0.0001674564,0.00005478222,0.00006856231,0.000007573319,0.00005424479,0.000116437,0.00000858049],"category_scores_gemma":[0.0000389765,0.00007439895,0.00003172411,0.00009272283,0.00004897072,0.00000201849,0.0000593045,0.00003326052,1.584159e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004232619,"about_ca_system_score_gemma":0.000007248388,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005779289,"about_ca_topic_score_gemma":0.0001035602,"domain_scores_codex":[0.9994406,0.00002988908,0.000127731,0.000269872,0.00004247706,0.00008948112],"domain_scores_gemma":[0.9996239,0.00001798719,0.000070895,0.0001682981,0.00008472698,0.00003418198],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006044421,0.00008856149,0.0230355,0.0000160301,0.0003324075,1.981901e-8,0.0000143559,0.000002510653,0.9763091,0.000008477889,0.00005172365,0.00008085476],"study_design_scores_gemma":[0.0002245254,0.0001153274,0.04399348,0.00001425074,0.0003374841,3.528347e-7,0.000005132006,0.000424234,0.9546425,0.00004591024,0.0001134068,0.00008337545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.986328,0.0003447289,0.01297755,0.00003142688,0.000002720339,0.0001724058,0.00009646254,0.00001201638,0.00003467171],"genre_scores_gemma":[0.9770811,0.0003069917,0.0218085,0.00003462843,0.00004037537,0.00009068118,0.0005195721,0.000009288361,0.0001088829],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02166659,"threshold_uncertainty_score":0.3033901,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02247916232504047,"score_gpt":0.2447853258838953,"score_spread":0.2223061635588549,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}