{"id":"W1982474852","doi":"10.1371/journal.pone.0093287","title":"Reference Gene Selection for Gene Expression Analysis of Oocytes Collected from Dairy Cattle and Buffaloes during Winter and Summer","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo; American Physical Therapy Association","keywords":"Reference genes; Biology; SDHA; Gene; Gene expression; Gene expression profiling; Genetics; Dairy cattle; Normalization (sociology); Real-time polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001106533,0.0004276527,0.0007591401,0.00101858,0.0006323284,0.0006187246,0.0004758736,0.0004206281,0.001626517],"category_scores_gemma":[0.001463895,0.0002506832,0.0004465888,0.001425985,0.0006377575,0.0003843904,0.0003428622,0.0004476868,0.0005279676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003812239,"about_ca_system_score_gemma":0.0004979887,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002677674,"about_ca_topic_score_gemma":0.006041157,"domain_scores_codex":[0.9988506,0.0001539715,0.0001193016,0.000434135,0.0003296931,0.0001122576],"domain_scores_gemma":[0.9993132,0.0001564605,0.0001261188,0.00007446745,0.0002987355,0.00003096005],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001445929,0.00002944417,0.003516963,0.0001364754,0.0000179039,0.00005258129,0.0001816914,0.00003944645,0.990032,0.0001075832,0.0001001637,0.005641134],"study_design_scores_gemma":[0.00003153742,0.0008653189,0.1688281,0.00008442056,0.000213324,0.0007440904,0.0006162908,0.001326527,0.8073565,0.0002743547,0.01961627,0.00004331543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8631555,0.00810418,0.1170941,0.0001820716,0.0003226308,0.0007089192,0.005918812,0.000500861,0.004012893],"genre_scores_gemma":[0.7428409,0.004949474,0.22215,0.0003940315,0.0001144951,0.002923362,0.01794839,0.0007905941,0.007888687],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002677674,"threshold_uncertainty_score":0.005851984,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02247916232504047,"score_gpt":0.2447853258838953,"score_spread":0.2223061635588549,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}