{"id":"W1982657612","doi":"10.1016/j.protis.2012.08.002","title":"Amoeba Stages in the Deepest Branching Heteroloboseans, Including Pharyngomonas: Evolutionary and Systematic Implications","year":2012,"lang":"en","type":"article","venue":"Protist","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Ural Branch, Russian Academy of Sciences; Rochester Academy of Science; Universitetet i Oslo; Kyungpook National University; Canadian Institute for Advanced Research","keywords":"Biology; Amoeba (genus); Flagellate; Taxon; Phylogenetic tree; 18S ribosomal RNA; Protist; Ribosomal DNA; Evolutionary biology; Phylogenetics; Zoology; Ribosomal RNA; Ecology; Botany; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003847938,0.00009382128,0.0001025322,0.00003028086,0.0002227756,0.00002793658,0.0001960761,0.00005853004,0.000003240673],"category_scores_gemma":[0.00007104011,0.00007500801,0.00003187384,0.00007225522,0.00006458192,0.00001428118,0.0001373213,0.00008945086,0.000006868197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000159463,"about_ca_system_score_gemma":0.00001356534,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003253482,"about_ca_topic_score_gemma":0.00002987198,"domain_scores_codex":[0.9992601,0.0001591987,0.0001357882,0.0001551476,0.00007968561,0.0002100414],"domain_scores_gemma":[0.9996298,0.00003280806,0.00005610875,0.0002141723,0.0000190485,0.00004808611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001998972,0.0001354797,0.9640837,0.001522516,0.00004055216,0.000002248206,0.0008333481,0.000007307992,0.03023344,0.002464168,0.0004065957,0.0002506623],"study_design_scores_gemma":[0.0004342336,0.00008852557,0.9936925,0.0002352577,0.00004071527,0.0001675221,0.0003439917,0.00002870505,0.003129154,0.0007704679,0.0008296902,0.0002392678],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905392,0.006073472,0.001048127,0.0004538932,0.00005791061,0.001153804,0.00004330699,0.00001134891,0.0006189446],"genre_scores_gemma":[0.998904,0.00008457159,0.0003445096,0.0002641364,0.0001107908,0.0001962136,0.00005339979,0.000006857917,0.00003546311],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02960878,"threshold_uncertainty_score":0.3058738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0235874393805155,"score_gpt":0.2719701204938454,"score_spread":0.24838268111333,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}