{"id":"W1982716235","doi":"10.4161/epi.24177","title":"Assembling a COMPASS","year":2013,"lang":"en","type":"article","venue":"Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Canada Research Chairs","keywords":"Biology; Epigenetics; Histone; Computational biology; Compass; Function (biology); Histone code; Cell biology; Genetics; Gene; Nucleosome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001192903,0.0001326776,0.0001055414,0.00003903951,0.0000792688,0.0000564525,0.0001646281,0.0001252839,0.0001204774],"category_scores_gemma":[0.00006421408,0.0001324993,0.00006676502,0.00008420619,0.00003939098,0.000002456613,0.00008513612,0.00006613822,0.0002009193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008090552,"about_ca_system_score_gemma":0.0000338931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003190137,"about_ca_topic_score_gemma":0.00001678181,"domain_scores_codex":[0.9990957,0.00004658832,0.0002078945,0.0002619197,0.0001370453,0.0002507947],"domain_scores_gemma":[0.9993176,0.00001382953,0.00006380318,0.000358923,0.0001349449,0.0001108992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000003782879,0.0000425947,0.01626403,0.000006984039,0.00002331743,5.893204e-7,0.00002972464,0.000679635,0.9687511,0.0001055693,0.001749533,0.01234313],"study_design_scores_gemma":[0.0003480596,0.0002303916,0.06162237,0.000007118823,0.00001325226,0.000001708854,0.00004925455,0.001065804,0.8274011,0.001403975,0.107534,0.0003229331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9717863,0.002284076,0.0189757,0.0001952859,0.0002233171,0.0002117182,0.000003457801,0.00001880696,0.006301326],"genre_scores_gemma":[0.9913604,0.0004361984,0.006523868,0.000168944,0.0003270866,0.00003259433,0.00006215101,0.00002869255,0.001060108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.14135,"threshold_uncertainty_score":0.5403165,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01308272837652781,"score_gpt":0.2549419554825396,"score_spread":0.2418592271060118,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}