{"id":"W1982716235","doi":"10.4161/epi.24177","title":"Assembling a COMPASS","year":2013,"lang":"en","type":"article","venue":"Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Canada Research Chairs","keywords":"Biology; Epigenetics; Histone; Computational biology; Compass; Function (biology); Histone code; Cell biology; Genetics; Gene; Nucleosome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003485627,0.0007692581,0.0006609417,0.0006432299,0.001978928,0.002479185,0.001242548,0.00129072,0.01567594],"category_scores_gemma":[0.001174645,0.001083286,0.0005303521,0.0004992711,0.001822493,0.002931475,0.003303871,0.001470329,0.008424705],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006397031,"about_ca_system_score_gemma":0.000821452,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008205007,"about_ca_topic_score_gemma":0.0007164785,"domain_scores_codex":[0.9993402,0.00005111875,0.00003222796,0.0002601417,0.0001976689,0.0001185398],"domain_scores_gemma":[0.9993253,0.00004675308,0.00008382976,0.0001283243,0.0001119375,0.0003037916],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002980779,0.0001788442,0.005160668,0.0005227283,0.0002111611,0.002305346,0.001890672,0.004778376,0.7715713,0.1514126,0.007458684,0.05421155],"study_design_scores_gemma":[0.0001020955,0.001010609,0.006658911,0.0002287682,0.0001264348,0.003688386,0.002739201,0.02194084,0.3962452,0.05902138,0.5079727,0.0002653899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.620688,0.006961312,0.2567368,0.003000157,0.004295601,0.0005296107,0.0004815101,0.004247438,0.1030597],"genre_scores_gemma":[0.8460012,0.002908257,0.08279465,0.00109383,0.0003911537,0.0002787421,0.0007711869,0.0006337274,0.06512716],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01567594,"threshold_uncertainty_score":0.05244124,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01308272837652781,"score_gpt":0.2549419554825396,"score_spread":0.2418592271060118,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}