{"id":"W1982822486","doi":"10.1128/jvi.00579-12","title":"T Cells Target APOBEC3 Proteins in Human Immunodeficiency Virus Type 1-Infected Humans and Simian Immunodeficiency Virus-Infected Indian Rhesus Macaques","year":2013,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Bill and Melinda Gates Foundation; National Institute of Allergy and Infectious Diseases; Oregon National Primate Research Center; University of California, San Francisco; California National Primate Research Center; National Institutes of Health","keywords":"Simian immunodeficiency virus; Biology; Virology; Epitope; Lentivirus; Immunodeficiency; Virus; Cytotoxic T cell; Immune system; Antibody; Immunology; Viral disease; Genetics; In vitro","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001306828,0.0002775624,0.0001797771,0.0002445721,0.000293972,0.0002703348,0.000101967,0.0003087634,0.001184863],"category_scores_gemma":[0.0003165341,0.00009614476,0.0001648212,0.00009166612,0.0002952038,0.00009159788,0.000167446,0.00033404,0.0001839241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001989538,"about_ca_system_score_gemma":0.0001251686,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001984234,"about_ca_topic_score_gemma":0.001403057,"domain_scores_codex":[0.9999059,0.00001979777,0.000005717901,0.00002372625,0.00001266289,0.00003213709],"domain_scores_gemma":[0.9999238,0.00002109498,0.000009908235,0.00001020267,0.000009838867,0.00002505965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004892249,0.00009435697,0.02262522,0.00009277245,0.00002713912,0.002440698,0.000704419,0.0001009245,0.9610118,0.0003169081,0.0002106699,0.01188582],"study_design_scores_gemma":[0.0002726486,0.003699008,0.6039703,0.0001358692,0.0003272754,0.05603593,0.002516546,0.001982386,0.3143611,0.001256705,0.01538141,0.0000607709],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982041,0.0005768328,0.0001047427,0.0000347937,0.000006694811,0.00001336464,0.0000194954,0.000008138711,0.001031822],"genre_scores_gemma":[0.9991559,0.0002082181,0.0001581092,0.00005495469,0.0000115832,0.00001213443,0.00003117821,0.000002321359,0.0003656632],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001984234,"threshold_uncertainty_score":0.003963709,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01030851632525268,"score_gpt":0.2582355580015673,"score_spread":0.2479270416763146,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}