{"id":"W1982898147","doi":"10.1073/pnas.0812199106","title":"<i>Agrobacterium tumefaciens</i> VirC2 enhances T-DNA transfer and virulence through its C-terminal ribbon–helix–helix DNA-binding fold","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; National Institute for Health and Care Research; National Institutes of Health; University of Alberta; Institut National de la Santé et de la Recherche Médicale; Howard Hughes Medical Institute","keywords":"Agrobacterium tumefaciens; DNA; Helix (gastropod); Biology; Molecular biology; Genetics; Agrobacterium; Terminal (telecommunication); Gene; Transformation (genetics); Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001460268,0.0003909145,0.0002171229,0.0001529533,0.0001706367,0.0004420415,0.0002059118,0.0002425853,0.001226653],"category_scores_gemma":[0.0001280233,0.0001518075,0.0002152068,0.0001459735,0.0002067666,0.0001561468,0.0002065451,0.0005730538,0.0005275717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007184911,"about_ca_system_score_gemma":0.0002610317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001489649,"about_ca_topic_score_gemma":0.002378967,"domain_scores_codex":[0.9998629,0.00001946479,0.000007081178,0.00002557361,0.00005858599,0.00002641521],"domain_scores_gemma":[0.9998975,0.00001146427,0.00002677609,0.00001176729,0.00001481679,0.00003772207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002605155,0.00001204537,0.0001112637,0.00001372607,0.000003579307,0.00002605498,0.000003495469,0.00006049293,0.9993632,0.00004132185,0.00006103859,0.0002776127],"study_design_scores_gemma":[0.00002682387,0.00009735047,0.004365989,0.000004064184,0.00001137018,0.0004048307,0.00001872812,0.0018469,0.989778,0.00003663886,0.003403244,0.000006146897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944572,0.0006370783,0.001518915,0.0001729241,0.00001953438,0.00001448486,0.0003454302,0.0002183009,0.002616102],"genre_scores_gemma":[0.992542,0.0002221513,0.003336678,0.00008831116,0.000009510729,0.000008420159,0.001277584,0.00006095333,0.002454422],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001489649,"threshold_uncertainty_score":0.005213022,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02438345654662355,"score_gpt":0.2771721518456578,"score_spread":0.2527886952990342,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}