{"id":"W1983083213","doi":"10.1186/1471-2164-9-615","title":"Genomic sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex","year":2008,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Directorate for Biological Sciences","keywords":"Burkholderia cenocepacia; Biology; Prophage; Burkholderia cepacia complex; Microbiology; Genome; Virulence; Phage therapy; Genetics; Transposable element; Whole genome sequencing; Insertion sequence; Burkholderia; Bacteriophage; Gene; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005609364,0.00008854076,0.0001454552,0.00001124719,0.0001145357,0.000005282343,0.0001786736,0.00003840898,0.0004842729],"category_scores_gemma":[0.0000047943,0.00007323797,0.00007131434,0.00007658172,0.0003777778,0.00009038833,0.0001019826,0.00007181851,0.00001719175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007672113,"about_ca_system_score_gemma":0.00002588901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009259679,"about_ca_topic_score_gemma":0.0007016969,"domain_scores_codex":[0.9994653,0.00003325509,0.0001583358,0.0001543508,0.00005635911,0.0001324043],"domain_scores_gemma":[0.9995886,0.00002363568,0.0001196413,0.0002258076,0.000005691571,0.00003663749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002219575,0.00004349526,0.01197424,0.00001310473,0.000006000861,4.355524e-7,0.00068707,0.0002981003,0.9866294,0.000007825033,0.00008834583,0.0002297792],"study_design_scores_gemma":[0.0002128981,0.00002684623,0.5959827,0.000005485434,0.00001465919,0.00003615203,0.00004034067,0.0004101398,0.4007146,0.00002662478,0.002448094,0.00008143838],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982777,0.00001590069,0.0002847748,0.00003441548,0.00007361804,0.0001706577,0.00009312357,0.00000615224,0.001043617],"genre_scores_gemma":[0.9973621,0.00006180482,0.00215313,0.00003514678,0.00001132117,0.000002513804,0.000002027024,0.00000930453,0.0003625852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5859147,"threshold_uncertainty_score":0.5302448,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05027696176200532,"score_gpt":0.2424085833046958,"score_spread":0.1921316215426905,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}