{"id":"W1983320630","doi":"10.1371/journal.ppat.1000711","title":"Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria","year":2010,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":442,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"European Commission; Genome Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; European Molecular Biology Organization; National Science Foundation","keywords":"Biology; Salmonella enterica; Microbiology; Colonisation resistance; Colonization; Microbiome; Gut flora; Commensalism; Host (biology); Pathogenic bacteria; Bacteria; Metagenomics; Immunology; Genetics; Salmonella; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002065427,0.0001826535,0.0002296743,0.00004861286,0.0001030842,0.00002327911,0.0001637336,0.0001833325,0.00006217879],"category_scores_gemma":[0.0001674663,0.0001799756,0.00004585282,0.000152553,0.0001181716,0.000005566766,0.000147569,0.0001529317,0.000005730825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002001353,"about_ca_system_score_gemma":0.0001206589,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004554044,"about_ca_topic_score_gemma":0.00101417,"domain_scores_codex":[0.9987417,0.00007969784,0.0003339495,0.0004459119,0.0001064606,0.0002922624],"domain_scores_gemma":[0.9990741,0.00002072066,0.0001113948,0.000356934,0.0001985785,0.0002382867],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009055962,0.0001093572,0.06655702,0.00004591451,0.00002303492,0.000001635902,0.0004432747,0.000001094483,0.9296362,0.00001347828,0.002893409,0.0001850406],"study_design_scores_gemma":[0.0008768986,0.002764612,0.4003954,0.00007981269,0.00009092511,0.00004777839,0.0002542635,0.00003752973,0.557234,0.00003331472,0.03763503,0.0005504346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976286,0.00007768477,0.00006696477,0.000544687,0.0002395854,0.0004649455,0.0008766964,0.00002159755,0.00007923607],"genre_scores_gemma":[0.9959055,0.00006142697,0.002565982,0.000529052,0.00009304253,0.00001638451,0.0004680217,0.00002593384,0.0003346944],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3724022,"threshold_uncertainty_score":0.7339193,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007910646175197092,"score_gpt":0.2276971273240047,"score_spread":0.2197864811488076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}