{"id":"W1983320630","doi":"10.1371/journal.ppat.1000711","title":"Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria","year":2010,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":442,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"European Commission; Genome Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; European Molecular Biology Organization; National Science Foundation","keywords":"Biology; Salmonella enterica; Microbiology; Colonisation resistance; Colonization; Microbiome; Gut flora; Commensalism; Host (biology); Pathogenic bacteria; Bacteria; Metagenomics; Immunology; Genetics; Salmonella; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008001026,0.0003701528,0.0003768523,0.0007477981,0.0003727958,0.0008172885,0.000351169,0.001032269,0.01250896],"category_scores_gemma":[0.003363777,0.000158155,0.0003883137,0.0004429146,0.0003210926,0.0009453659,0.0005617528,0.0004993048,0.004529629],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001272006,"about_ca_system_score_gemma":0.0001216022,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006063198,"about_ca_topic_score_gemma":0.001061646,"domain_scores_codex":[0.9996396,0.00009996614,0.0000341123,0.00008716599,0.00008096207,0.00005825498],"domain_scores_gemma":[0.9981745,0.0003137574,0.0006121135,0.0001280121,0.0002375359,0.0005341218],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00236188,0.0005125714,0.8947687,0.0003475825,0.0003126619,0.0004576125,0.0004374076,0.0005599126,0.01313409,0.0004256741,0.01680336,0.06987864],"study_design_scores_gemma":[0.00006242214,0.001920391,0.9539342,0.0001416548,0.0002523602,0.004253271,0.001420944,0.003943807,0.00529011,0.002646443,0.02603579,0.00009863725],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9746811,0.001274158,0.003704063,0.001426934,0.0004235307,0.0001553981,0.004598496,0.0003947522,0.01334151],"genre_scores_gemma":[0.9796469,0.0009315221,0.005441532,0.001810496,0.0002342572,0.0001415517,0.003116143,0.0000583114,0.008619256],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01250896,"threshold_uncertainty_score":0.04184663,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007910646175197092,"score_gpt":0.2276971273240047,"score_spread":0.2197864811488076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}