{"id":"W1983351627","doi":"10.3791/4056","title":"Mapping Bacterial Functional Networks and Pathways in &lt;em&gt;Escherichia Coli&lt;/em&gt; using Synthetic Genetic Arrays","year":2012,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina; University of Toronto","funders":"Canadian Institutes of Health Research; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Genetics; Mutant; Homologous recombination; Gene; Epistasis; Genome; Phenotype; Computational biology; Genetic screen; Allele","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002980488,0.0007387002,0.0004115971,0.0008775468,0.0002560745,0.0007734368,0.0005440131,0.0003323498,0.001835701],"category_scores_gemma":[0.0002630098,0.0003435772,0.0003722392,0.0007093935,0.0004017303,0.0003092619,0.0005147654,0.0006202142,0.001444184],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005286988,"about_ca_system_score_gemma":0.0002404644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008458529,"about_ca_topic_score_gemma":0.001642304,"domain_scores_codex":[0.9996512,0.00006292148,0.00003083031,0.00009354026,0.0001235933,0.00003786974],"domain_scores_gemma":[0.9997689,0.00006616644,0.00005761812,0.0000372068,0.00002926641,0.0000408668],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003216428,0.00001205691,0.0002815063,0.00005921606,0.000006492331,0.00001888948,0.00000895664,0.0005722701,0.99534,0.0002649692,0.000105793,0.00329765],"study_design_scores_gemma":[0.00001355794,0.0001384066,0.01160325,0.00001739052,0.00003454273,0.0001411212,0.00003425065,0.01169425,0.965915,0.0004516425,0.00993514,0.0000214296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5213683,0.002063727,0.443398,0.000296819,0.00007141396,0.0003187618,0.0191987,0.004584907,0.008699404],"genre_scores_gemma":[0.5658377,0.002158879,0.4067645,0.0003156648,0.00002302759,0.0006546679,0.0164889,0.0006046783,0.00715206],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001835701,"threshold_uncertainty_score":0.006141067,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02533122183570682,"score_gpt":0.300920423233466,"score_spread":0.2755892013977592,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}