{"id":"W1983571204","doi":"10.1007/s00122-010-1474-7","title":"Population structure and linkage disequilibrium in oat (Avena sativa L.): implications for genome-wide association studies","year":2010,"lang":"en","type":"article","venue":"Theoretical and Applied Genetics","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agricultural Research Service; National Institute of Food and Agriculture","keywords":"Linkage disequilibrium; Biology; Genome-wide association study; Germplasm; Population; Genetic association; Genetics; Avena; Association mapping; Quantitative trait locus; Haplotype; Allele; Single-nucleotide polymorphism; Botany; Genotype; Demography; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009852439,0.0001163503,0.0001853973,0.0008784697,0.0003997836,0.0005305935,0.0003114417,0.0002505391,0.0005787227],"category_scores_gemma":[0.001582343,0.0001412325,0.0002208145,0.0009351841,0.0004187115,0.0002888052,0.0003439481,0.0003041617,0.00006816289],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004076092,"about_ca_system_score_gemma":0.0002051522,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003374286,"about_ca_topic_score_gemma":0.007025304,"domain_scores_codex":[0.9993953,0.0002726102,0.00004043709,0.0001912646,0.00006164109,0.00003883019],"domain_scores_gemma":[0.9990927,0.0004518918,0.0002500719,0.00007039792,0.00007439141,0.0000604438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008033414,0.0001762369,0.8788118,0.000078981,0.0009034847,0.0004612893,0.001078731,0.003119501,0.07984442,0.006615462,0.0003169354,0.02778979],"study_design_scores_gemma":[0.0000316468,0.00007362405,0.9909497,0.000009459372,0.0001190397,0.0001844083,0.0002202725,0.004525999,0.0007011889,0.002589259,0.0005795911,0.00001585948],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980493,0.0002595575,0.001215732,0.00007737838,0.000004600032,0.000001983546,0.00007946092,0.000006661574,0.0003052594],"genre_scores_gemma":[0.999164,0.00007516299,0.0004985582,0.00001571356,0.000005677024,0.000003302649,0.0000857966,0.000004045718,0.0001476956],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003374286,"threshold_uncertainty_score":0.006709278,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008102496639299416,"score_gpt":0.2465034068032855,"score_spread":0.2384009101639861,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}