{"id":"W1983694387","doi":"10.1039/c0cp00550a","title":"Effects of the biological backbone on stacking interactions at DNA–protein interfaces: the interplay between the backbone⋯π and π⋯π components","year":2010,"lang":"en","type":"article","venue":"Physical Chemistry Chemical Physics","topic":"Crystallography and molecular interactions","field":"Chemistry","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge","funders":"Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Stacking; Deoxyribose; Chemistry; Monomer; Side chain; Directionality; Crystallography; Interaction energy; Ring (chemistry); Macromolecule; Stereochemistry; DNA; Chemical physics; Computational chemistry; Molecule; Polymer; Organic chemistry; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007173552,0.0003826854,0.0003714504,0.000007896677,0.0003217653,0.00006155469,0.0008108803,0.0001575442,0.00008771322],"category_scores_gemma":[0.0002265806,0.0002034351,0.0004352271,0.0002013621,0.001085398,0.00007378609,0.0007300252,0.00177177,0.0000103589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006207643,"about_ca_system_score_gemma":0.000017131,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002069556,"about_ca_topic_score_gemma":0.000002275697,"domain_scores_codex":[0.9984274,0.00004980539,0.0003385567,0.0004849873,0.0003408272,0.0003584286],"domain_scores_gemma":[0.9974139,0.001323351,0.0002677088,0.0007940676,0.00007777772,0.0001231972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006052434,0.0004226168,0.0002248777,0.0001469149,0.0001622443,0.000001211027,0.0002547826,0.000004294491,0.9976181,0.0001757997,0.0001584135,0.0007701825],"study_design_scores_gemma":[0.0003744638,0.00001583464,0.000304873,0.0001916441,0.0001038371,0.000008750872,0.00007710615,0.000148413,0.9947824,0.001555183,0.002202507,0.0002350035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963467,0.0000180637,0.00004732478,0.0005395779,0.00009553006,0.0002038733,0.00009304265,0.00005437251,0.002601557],"genre_scores_gemma":[0.9988979,0.000003052039,0.00001582208,0.00009816937,0.0006575146,0.00007990513,0.00005735048,0.00003396275,0.0001563371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002835754,"threshold_uncertainty_score":0.8295841,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0121891975133819,"score_gpt":0.2620576848158787,"score_spread":0.2498684873024968,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}