{"id":"W1984241784","doi":"10.1186/1745-6150-6-34","title":"Telling the whole story in a 10,000-genome world","year":2011,"lang":"en","type":"article","venue":"Biology Direct","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Canada Research Chairs; Leverhulme Trust","keywords":"Biology; Genome; Phylogenetic tree; Phylogenetics; Evolutionary biology; Phylum; Computational biology; Bacterial genome size; Phylogenetic network; Taxonomic rank; Metagenomics; Genetics; Taxon; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003053188,0.0009833481,0.0006291218,0.0009977391,0.00256044,0.009323278,0.001317723,0.004856524,0.01170793],"category_scores_gemma":[0.009863943,0.0005181624,0.0005659013,0.002135979,0.005071544,0.02317734,0.003083384,0.008682492,0.003459836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001934709,"about_ca_system_score_gemma":0.001970022,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002637868,"about_ca_topic_score_gemma":0.001767828,"domain_scores_codex":[0.9991902,0.0002437115,0.00003755577,0.0002148375,0.0001909662,0.000122822],"domain_scores_gemma":[0.995409,0.002269689,0.0003414817,0.0005375113,0.000571773,0.0008704689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.000369462,0.0000919776,0.01005656,0.001318808,0.0001980543,0.001458573,0.004080096,0.003390423,0.005456126,0.3525282,0.3851224,0.2359293],"study_design_scores_gemma":[0.00001295827,0.00004590395,0.004169197,0.0005456779,0.00004491047,0.000632357,0.003066495,0.0009845305,0.0006566849,0.3116814,0.6781003,0.00005953134],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.04853339,0.1672691,0.03802112,0.6682438,0.01374977,0.00006018619,0.004662117,0.001675519,0.05778491],"genre_scores_gemma":[0.4876074,0.195909,0.07469919,0.18229,0.0105908,0.0002612759,0.007196918,0.001652782,0.03979272],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01170793,"threshold_uncertainty_score":0.03916693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02728157945559082,"score_gpt":0.2323748950503464,"score_spread":0.2050933155947556,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}