{"id":"W1984475745","doi":"10.1186/1471-2164-10-349","title":"Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933","year":2009,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Biology; Virulence; Gene; Escherichia coli; Pathogenic Escherichia coli; Genetics; Mutant; Microbiology; Transcriptome; Gene expression; Promoter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001012491,0.0005351497,0.0004561274,0.0003285702,0.0001117336,0.0003561288,0.0001789041,0.0003055904,0.0007474234],"category_scores_gemma":[0.0001172639,0.0001229194,0.0002851882,0.0004054487,0.0002741798,0.0001487451,0.000211908,0.0004705081,0.0002124198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002863052,"about_ca_system_score_gemma":0.0001335338,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006350057,"about_ca_topic_score_gemma":0.0006882744,"domain_scores_codex":[0.9997903,0.00001868462,0.00001781441,0.00006345556,0.0000665789,0.00004325094],"domain_scores_gemma":[0.999817,0.00003714124,0.0000603052,0.00001460042,0.0000327223,0.00003822365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001400415,0.00002299927,0.0003462868,0.00002526672,0.000004147726,0.00002481633,0.000009478878,0.00002300208,0.999,0.000005454908,0.0000154048,0.0003830703],"study_design_scores_gemma":[0.00001338482,0.0004959948,0.05020376,0.000009959894,0.00003875581,0.0002004935,0.0001436802,0.0005916316,0.947526,0.00003904312,0.000725119,0.00001219222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952067,0.0008536043,0.001002857,0.0000924777,0.00002461728,0.00001528241,0.002260022,0.00006083592,0.0004836521],"genre_scores_gemma":[0.9923192,0.0004543014,0.001936076,0.0001131769,0.00001218042,0.000053643,0.00381322,0.0000455601,0.001252632],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007474234,"threshold_uncertainty_score":0.002500355,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00645545544790106,"score_gpt":0.2274921944228646,"score_spread":0.2210367389749635,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}