{"id":"W1984981193","doi":"10.1371/journal.pone.0051808","title":"Pathway and Molecular Mechanisms for Malachite Green Biodegradation in Exiguobacterium sp. MG2","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Yunnan Provincial Science and Technology Department; National Key Research and Development Program of China; McMaster University","keywords":"Biodegradation; Triphenylmethane; Demethylation; Chemistry; Malachite green; Metabolic pathway; Bacteria; Bioremediation; Biochemistry; Chromatography; Enzyme; Organic chemistry; Biology; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002289085,0.0000982506,0.0001263724,0.00001968186,0.00004791501,0.00002554165,0.00007587131,0.00008957676,0.00003619309],"category_scores_gemma":[0.00005327171,0.00004535723,0.00002426839,0.0001597272,0.00001532348,0.0002247827,0.00003056162,0.00006169945,0.00001539625],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001880796,"about_ca_system_score_gemma":0.000002763518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001222632,"about_ca_topic_score_gemma":0.0002089891,"domain_scores_codex":[0.9992354,0.00004558533,0.0001464458,0.000171577,0.0001580231,0.0002429683],"domain_scores_gemma":[0.999714,0.0000653652,0.00006145467,0.00004167956,0.00003589675,0.00008165291],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000157479,0.0003587439,0.01008169,0.00001647781,0.00001119112,4.982949e-7,0.00004912422,7.956041e-8,0.9798861,0.001344107,0.000008955439,0.008227328],"study_design_scores_gemma":[0.0003564882,0.0002671185,0.2832031,0.00005948684,0.0000382762,0.000001514996,0.00009576283,0.0003145511,0.7122847,0.002736824,0.0003729249,0.0002692315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977047,0.0001477469,0.00009676984,0.001437309,0.00003343701,0.0003648157,0.00006604884,0.00004401195,0.0001051283],"genre_scores_gemma":[0.9963911,0.00002383869,0.002676966,0.000208991,0.0001139561,0.00006864509,0.0004043977,0.000001626127,0.0001105092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2731214,"threshold_uncertainty_score":0.1849614,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03841608983117144,"score_gpt":0.1965354602169094,"score_spread":0.158119370385738,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}