{"id":"W1984981193","doi":"10.1371/journal.pone.0051808","title":"Pathway and Molecular Mechanisms for Malachite Green Biodegradation in Exiguobacterium sp. MG2","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Yunnan Provincial Science and Technology Department; National Key Research and Development Program of China; McMaster University","keywords":"Biodegradation; Triphenylmethane; Demethylation; Chemistry; Malachite green; Metabolic pathway; Bacteria; Bioremediation; Biochemistry; Chromatography; Enzyme; Organic chemistry; Biology; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108385,0.0008604853,0.0003006983,0.0004109181,0.0002538372,0.0003960557,0.0003290846,0.0007106568,0.0004090284],"category_scores_gemma":[0.000100722,0.0001954375,0.0005853499,0.0003268188,0.0002611552,0.0006218736,0.0003902713,0.0003823721,0.0002634196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004150415,"about_ca_system_score_gemma":0.0003666027,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0022437,"about_ca_topic_score_gemma":0.001216159,"domain_scores_codex":[0.999859,0.0000151796,0.00001625926,0.00003985889,0.00003193169,0.0000378262],"domain_scores_gemma":[0.9999105,0.000007602589,0.00003195911,0.0000095897,0.00002331739,0.00001707458],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008492111,0.00003827807,0.00212842,0.0001387565,0.00001184906,0.0004413027,0.00005816399,0.0002698018,0.9938468,0.0003621198,0.00004712443,0.002572414],"study_design_scores_gemma":[0.00003148351,0.0003734574,0.02803133,0.00002851822,0.00006294136,0.001243565,0.0003185033,0.005767073,0.9598438,0.000681134,0.003581371,0.00003674051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9808045,0.006018586,0.009872369,0.0004268177,0.00004222383,0.00009901026,0.0007907119,0.0002344591,0.001711401],"genre_scores_gemma":[0.9903935,0.001715146,0.005093948,0.0000966724,0.00001142455,0.00005886236,0.0008291971,0.00001582082,0.001785345],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0022437,"threshold_uncertainty_score":0.004461288,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03841608983117144,"score_gpt":0.1965354602169094,"score_spread":0.158119370385738,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}