{"id":"W1985064150","doi":"10.4161/mge.1.3.18448","title":"Mobile genetic elements in the genus Bacteroides, and their mechanism(s) of dissemination","year":2011,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Food Inspection Agency; U.S. Department of Veterans Affairs; U.S. Department of Agriculture","keywords":"Mobile genetic elements; Bacteroides; Biology; Gene; Microbiome; Antibiotics; Mechanism (biology); Microbiology; Commensalism; Bacteria; Genetics; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002977303,0.0002413936,0.0002088774,0.00006963023,0.00008144596,0.00001533096,0.0003529992,0.00009309971,0.00004628177],"category_scores_gemma":[0.00001519883,0.0001851522,0.0000672251,0.0001120763,0.00008374037,0.000001491987,0.0002230255,0.00006451999,0.000003295615],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001257577,"about_ca_system_score_gemma":0.00002504591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004558901,"about_ca_topic_score_gemma":0.00007557226,"domain_scores_codex":[0.9984778,0.0001079104,0.0005161945,0.0004114723,0.0001536816,0.0003329742],"domain_scores_gemma":[0.999204,0.00001737724,0.0001888915,0.0004680383,0.00006832335,0.00005339584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006386141,0.0004243051,0.1196632,0.00006457764,0.000187021,0.000005144204,0.004462489,0.00002761783,0.7786404,0.00005602264,0.0002525151,0.09615283],"study_design_scores_gemma":[0.001809259,0.00380779,0.4320896,0.00005497066,0.0001050035,0.00003457475,0.004423762,0.0002405092,0.5398986,0.001740005,0.01509575,0.0007001783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935162,0.004592643,0.0003919451,0.000003751965,0.0001101702,0.0009506351,0.00006096914,0.000002447783,0.0003712188],"genre_scores_gemma":[0.9939612,0.002351436,0.002821365,0.00007930654,0.00005590074,0.0005745796,0.00003713441,0.00002655195,0.00009249699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3124264,"threshold_uncertainty_score":0.7550285,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00984176097442543,"score_gpt":0.2316124676508888,"score_spread":0.2217707066764634,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}