{"id":"W1985458451","doi":"10.1093/femsle/fnv016","title":"First draft genome sequence of Aureimonas altamirensis, isolated from patient blood culture","year":2015,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Public Health; University of Toronto; Public Health Ontario","funders":"","keywords":"Contig; Whole genome sequencing; Blood culture; Genome; Biology; Microbiology; Bacillus cereus; Cellulitis; Insertion sequence; Computational biology; Genetics; Bacteria; Gene; Transposable element; Immunology; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004178657,0.001233925,0.001554621,0.002308046,0.001086428,0.001219603,0.0007400781,0.00120823,0.003877829],"category_scores_gemma":[0.001813419,0.0004518922,0.001164553,0.003492011,0.0003524527,0.000618564,0.0008647178,0.001514074,0.003693552],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005160433,"about_ca_system_score_gemma":0.002021538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005373611,"about_ca_topic_score_gemma":0.004971254,"domain_scores_codex":[0.9995667,0.00003842201,0.00007208319,0.0001236269,0.0001445569,0.00005457542],"domain_scores_gemma":[0.9989703,0.0002133587,0.0001817617,0.00007920522,0.0003925984,0.0001628394],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003380905,0.0003222119,0.009150349,0.008153128,0.0002149661,0.007696211,0.002270311,0.001510143,0.8417531,0.0009320061,0.03243864,0.09217805],"study_design_scores_gemma":[0.0003641869,0.00177905,0.1687591,0.001335864,0.001597722,0.01491864,0.003337824,0.002958742,0.1288531,0.002716009,0.6729679,0.0004119342],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3359098,0.01990769,0.0334398,0.002627078,0.001688767,0.0008582572,0.5902979,0.002678306,0.01259236],"genre_scores_gemma":[0.1278909,0.008985887,0.06283043,0.000389507,0.000324884,0.0003821217,0.7916459,0.0007709988,0.006779298],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.005373611,"threshold_uncertainty_score":0.01297259,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01121094195632601,"score_gpt":0.2000303467843741,"score_spread":0.188819404828048,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}