{"id":"W1985621167","doi":"10.1016/j.meegid.2009.08.003","title":"MLST scheme of Ehrlichia ruminantium: Genomic stasis and recombination in strains from Burkina-Faso","year":2009,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Centre de Coopération Internationale en Recherche Agronomique pour le Développement; Agence Universitaire de la Francophonie","keywords":"Biology; Multilocus sequence typing; Genetics; Genetic diversity; Ehrlichia; Locus (genetics); Linkage disequilibrium; Phylogenetic tree; Genome; Genotype; Gene; Virology; Tick; Haplotype; Population","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001218684,0.0001293265,0.0001790189,0.0002142466,0.0001024389,0.00001507776,0.00003423634,0.0001918721,0.00004720976],"category_scores_gemma":[0.00003639542,0.0001423881,0.00003569806,0.000151088,0.0001016491,0.00008033686,0.00002628127,0.0001219958,0.00001175588],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009640442,"about_ca_system_score_gemma":0.00004096213,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001111864,"about_ca_topic_score_gemma":0.000631267,"domain_scores_codex":[0.9991913,0.00009184013,0.0002668566,0.0002500197,0.00002905067,0.000170882],"domain_scores_gemma":[0.9996248,0.00002891526,0.0001292944,0.0001277931,0.00006594478,0.00002327263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004772104,0.0002322446,0.5653673,0.00001366259,0.00004381587,5.435242e-7,0.000169345,0.00007307354,0.4101896,0.001317611,0.00008422481,0.02246081],"study_design_scores_gemma":[0.001044162,0.0004320685,0.9862026,0.0000276844,0.00004076124,0.00001350521,0.00003959331,0.0002509299,0.007706516,0.003584584,0.0005186841,0.0001389186],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935514,0.005116358,0.0005322442,0.00007221185,0.0003033816,0.0001797833,0.00003928435,0.00003578297,0.0001695648],"genre_scores_gemma":[0.9980695,0.001662334,0.0001061129,0.00002149692,0.00002729059,0.000006238796,0.00007548773,0.000008089936,0.00002349908],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4208353,"threshold_uncertainty_score":0.5806418,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008635394440290515,"score_gpt":0.2305003885745109,"score_spread":0.2218649941342204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}