{"id":"W1985638105","doi":"10.1110/ps.062737507","title":"Structural context for protein <i>N</i>‐glycosylation in bacteria: The structure of PEB3, an adhesin from <i>Campylobacter jejuni</i>","year":2007,"lang":"en","type":"article","venue":"Protein Science","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Biotechnology Research Institute; Institute for Biological Sciences; McGill University","funders":"Biological and Environmental Research; Basic Energy Sciences; National Center for Research Resources; Canadian Institutes of Health Research; National Institutes of Health; U.S. Department of Energy","keywords":"Campylobacter jejuni; Context (archaeology); Periplasmic space; Biochemistry; Chemistry; Protein folding; Glycosylation; Dimer; Protein structure; Bacterial adhesin; Biology; Bacteria; Escherichia coli; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005019369,0.0001417709,0.0001412483,0.00004440347,0.0001563467,0.00003839646,0.0004511493,0.00008151006,0.00000885305],"category_scores_gemma":[0.0001344412,0.0001012023,0.00004188565,0.0001852882,0.0003791089,0.00000739994,0.0001211614,0.00006796029,3.645445e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001933969,"about_ca_system_score_gemma":0.0001149982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002331548,"about_ca_topic_score_gemma":0.001328624,"domain_scores_codex":[0.9988047,0.00003616767,0.000275965,0.0003965978,0.0001803164,0.0003062814],"domain_scores_gemma":[0.9992243,0.00001536551,0.0001580989,0.0003673411,0.0001789799,0.0000559339],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001462887,0.00001411517,0.003492273,0.000008007885,0.000006273681,1.900674e-7,0.0002484666,0.00001363711,0.9901462,0.000259301,0.000002659667,0.005662638],"study_design_scores_gemma":[0.0003994961,0.0002474529,0.07920681,0.00001378183,0.000004282413,0.000001166999,0.0001600652,0.0000638209,0.9173102,0.001691804,0.0007728881,0.00012827],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997726,0.0002701051,0.0004169724,0.00009239843,0.0001061677,0.00124074,0.0001086071,0.000002253176,0.00003672786],"genre_scores_gemma":[0.9946406,0.000003214166,0.005040898,0.00008974241,0.0001423882,0.00002597279,0.00002528646,0.00001057962,0.00002131353],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07571454,"threshold_uncertainty_score":0.4126908,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01204796702554319,"score_gpt":0.2510215789167703,"score_spread":0.2389736118912271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}