{"id":"W1985672280","doi":"10.1007/s10878-006-7120-2","title":"Genome rearrangements with partially ordered chromosomes","year":2006,"lang":"en","type":"article","venue":"Journal of Combinatorial Optimization","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Genome; Directed acyclic graph; Biology; Genetics; Chromosome; Combinatorics; Whole genome sequencing; Graph; Directed graph; Mathematics; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001038735,0.0004860988,0.0008049503,0.0008145191,0.0006313084,0.001144352,0.001191721,0.0009370944,0.003988436],"category_scores_gemma":[0.004269236,0.0006657115,0.0008340655,0.001130663,0.0008560169,0.001785369,0.001179358,0.0009927077,0.0003218996],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000839452,"about_ca_system_score_gemma":0.0007095957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001892644,"about_ca_topic_score_gemma":0.002799331,"domain_scores_codex":[0.9995307,0.0002223699,0.00001716039,0.00009593644,0.00007485124,0.00005911121],"domain_scores_gemma":[0.997382,0.002153639,0.0001480054,0.00015275,0.00008235124,0.0000811469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0003085927,0.00009228496,0.0009034389,0.00008836119,0.00003607475,0.0001169828,0.0001353672,0.8317138,0.002943795,0.08883903,0.001486749,0.07333552],"study_design_scores_gemma":[0.00007167696,0.00006424757,0.000175818,0.0000115961,0.00001705609,0.00003311186,0.00004039034,0.9289775,0.001410317,0.06806978,0.001119085,0.000009301204],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1952808,0.0003334921,0.7953925,0.0004923127,0.0000590429,0.0001630137,0.0002173865,0.0006300574,0.007431367],"genre_scores_gemma":[0.5480293,0.0003350588,0.4443906,0.0001598976,0.00006319555,0.0003221404,0.0005439192,0.0002067326,0.005949122],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003988436,"threshold_uncertainty_score":0.01334268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004616278146711241,"score_gpt":0.2056867746474724,"score_spread":0.2010704965007612,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}