{"id":"W1985888332","doi":"10.1016/j.gene.2009.06.006","title":"Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods","year":2009,"lang":"en","type":"article","venue":"Gene","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Transfer RNA; Genetics; Gene; Mitochondrial DNA; Stop codon; Codon usage bias; Open reading frame; Drosophila melanogaster; Genome; Ribosomal RNA; RNA; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000141578,0.0000576936,0.00007754631,0.00001861457,0.00004025398,0.000008832993,0.00007822384,0.00007704433,9.03854e-7],"category_scores_gemma":[0.00002597945,0.00003543295,0.00003428217,0.00004967065,0.0000321915,0.00000333145,0.000005777692,0.00002820844,8.968353e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003148194,"about_ca_system_score_gemma":0.00001905066,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003710963,"about_ca_topic_score_gemma":0.00002676509,"domain_scores_codex":[0.999609,0.00003153042,0.0001367695,0.0001156645,0.00003434885,0.00007268188],"domain_scores_gemma":[0.9997501,0.00001253905,0.00004831277,0.0001562952,0.00002334386,0.000009410762],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002061505,0.0000162043,0.00001471545,0.000002812215,0.000003712806,1.656388e-8,0.0001349402,0.0001806736,0.9890259,0.001744929,0.000008453699,0.008661498],"study_design_scores_gemma":[0.001433714,0.00007754096,0.01267948,0.000008224828,0.00001450684,0.000001872744,0.00001527249,0.003093264,0.9682562,0.01397805,0.0003731184,0.0000687739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8837075,0.0005454197,0.1083168,0.006560596,0.00005955675,0.0007446175,0.00003629744,0.000002017083,0.00002717202],"genre_scores_gemma":[0.9978707,0.00041442,0.001126875,0.0002672734,0.00008829698,0.000111473,0.00007309066,0.00000490606,0.00004300869],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1141632,"threshold_uncertainty_score":0.1444914,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0133252451389336,"score_gpt":0.2429645377837504,"score_spread":0.2296392926448168,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}