{"id":"W1985983751","doi":"10.1016/j.ympev.2013.02.022","title":"Molecular markers from three organellar genomes unravel complex taxonomic relationships within the coralline algal genus Chiharaea (Corallinales, Rhodophyta)","year":2013,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Marine and coastal plant biology","field":"Earth and Planetary Sciences","cited_by":25,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; New Brunswick Innovation Foundation; Parks Canada; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Introgression; Plastid; Genome; Genus; Evolutionary biology; Cytochrome c oxidase subunit I; Nuclear gene; Botany; Mitochondrial DNA; Genetics; Gene; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002094504,0.0002454154,0.0002163015,0.00006176145,0.0002911247,0.00009792264,0.0002685822,0.0001479509,0.0004303353],"category_scores_gemma":[0.0000277465,0.0001896515,0.00007089679,0.0001589528,0.000197698,0.000051375,0.00006438405,0.0002488564,0.0001861353],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001025976,"about_ca_system_score_gemma":0.00005304928,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01049768,"about_ca_topic_score_gemma":0.007631389,"domain_scores_codex":[0.9985622,0.0002042612,0.0003219772,0.0004044189,0.0001815653,0.0003256475],"domain_scores_gemma":[0.9992257,0.00008114471,0.0001574444,0.0003234893,0.00006698709,0.0001452638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009207027,0.00003038017,0.9157888,0.00001855894,0.0001647436,0.00004138919,0.00005105889,0.01817754,0.04279103,0.001793014,0.0005037877,0.02054768],"study_design_scores_gemma":[0.0002674223,0.0001446288,0.8912863,0.000006422261,0.00005647321,0.00002622111,0.00005877756,0.09428644,0.0003440723,0.01223422,0.001019326,0.0002697763],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.980978,0.004396256,0.01206929,0.0004612354,0.0001437547,0.00044292,0.0001992099,0.00002607005,0.001283281],"genre_scores_gemma":[0.9948736,0.0001815766,0.003489416,0.0003011225,0.0000934085,0.000006841969,0.0009806835,0.00001070144,0.00006268565],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0761089,"threshold_uncertainty_score":0.9960915,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0225616974240357,"score_gpt":0.1805113198551568,"score_spread":0.1579496224311211,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}