{"id":"W1986379179","doi":"10.1073/pnas.1322410111","title":"Apo-bacteriophytochromes modulate bacterial photosynthesis in response to low light","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Light effects on plants","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biliverdin; Anoxygenic photosynthesis; Response regulator; Heme; Histidine kinase; Biliverdin reductase; Biochemistry; Chromophore; Photosynthesis; Bacteriochlorophyll; Biology; Phytochrome; Rhodopseudomonas palustris; Signal transduction; Biophysics; Cell biology; Bacteria; Chemistry; Heme oxygenase; Phototroph; Photochemistry; Enzyme; Botany; Gene; Histidine; Red light; Genetics; Bacterial protein","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001217246,0.0001099951,0.0001871487,0.00007369362,0.0001184979,0.00006167427,0.0008961001,0.00008842757,0.0001990312],"category_scores_gemma":[0.0007081786,0.00003800991,0.00006375295,0.00097691,0.0001875945,0.0005417209,0.000157047,0.00008818358,0.00002211158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003229461,"about_ca_system_score_gemma":0.000009159106,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004783964,"about_ca_topic_score_gemma":8.369846e-7,"domain_scores_codex":[0.9984359,0.00002437003,0.0003046702,0.0002755675,0.0007417218,0.0002178198],"domain_scores_gemma":[0.9992048,0.0003656972,0.0002234651,0.000004756584,0.0001413658,0.00005991785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008575254,0.00003843988,0.002704403,0.00001132941,0.000003184909,6.91199e-9,0.00007257755,0.000003432691,0.9956354,0.0001282296,0.000309372,0.001007839],"study_design_scores_gemma":[0.00004497459,0.0000572355,0.5012009,0.00007032192,0.000001131722,0.000001538807,0.00002778973,0.00004722089,0.4967676,0.001554577,0.0001700997,0.00005659676],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988308,0.000007749081,5.697489e-9,0.01048768,0.00002723067,0.0003931019,0.00002437887,0.00001197401,0.000739845],"genre_scores_gemma":[0.9992632,0.000004032851,0.0001688599,0.000304225,0.00008846451,0.00003655221,1.509204e-7,6.587296e-7,0.0001338848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4988678,"threshold_uncertainty_score":0.2179253,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01865666487364069,"score_gpt":0.2381363438265859,"score_spread":0.2194796789529452,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}