{"id":"W1986792028","doi":"10.1099/ijs.0.065292-0","title":"Rhodoluna lacicola gen. nov., sp. nov., a planktonic freshwater bacterium with stream-lined genome","year":2014,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Universität Innsbruck; Canadian Institutes of Health Research; Dalhousie University; Austrian Science Fund; Academy of Finland","keywords":"Biology; Diamino acid; 16S ribosomal RNA; Phylogenetic tree; Peptidoglycan; Strain (injury); Genome size; rpoB; Phylogenetics; Whole genome sequencing; Ribosomal RNA; Microbiology; Bacteria; Genome; Botany; Gene; Genetics; Gene sequence; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002119199,0.001122314,0.000546094,0.0007194363,0.0003585282,0.0005537653,0.0005042175,0.0004780031,0.0005557582],"category_scores_gemma":[0.0003695743,0.0002116059,0.0003200489,0.001036546,0.0001525593,0.0004664193,0.0006864507,0.0004537314,0.001037851],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002008402,"about_ca_system_score_gemma":0.0005030384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00438852,"about_ca_topic_score_gemma":0.006245001,"domain_scores_codex":[0.9996227,0.00002136649,0.00007551752,0.0001300984,0.00007723408,0.00007304097],"domain_scores_gemma":[0.9997619,0.00002571786,0.0000525679,0.00003710244,0.00007337706,0.00004931365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003816267,0.000136062,0.01535489,0.0007757739,0.00004796607,0.002158297,0.0002709208,0.0003527944,0.9356653,0.0001285889,0.0008938577,0.04383405],"study_design_scores_gemma":[0.000200662,0.002086081,0.4593036,0.0004206544,0.0007543819,0.02673981,0.002473363,0.006574282,0.4060844,0.0005234619,0.09468716,0.000152227],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9721469,0.006042734,0.004684539,0.0002702193,0.0001753233,0.000374923,0.01044122,0.0003895788,0.005474621],"genre_scores_gemma":[0.9225772,0.004644773,0.02848138,0.0003488323,0.0001079523,0.0004586421,0.03665709,0.00008152289,0.006642561],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00438852,"threshold_uncertainty_score":0.008725941,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008353193860808517,"score_gpt":0.2132379117195557,"score_spread":0.2048847178587472,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}