{"id":"W1986792028","doi":"10.1099/ijs.0.065292-0","title":"Rhodoluna lacicola gen. nov., sp. nov., a planktonic freshwater bacterium with stream-lined genome","year":2014,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Universität Innsbruck; Canadian Institutes of Health Research; Dalhousie University; Austrian Science Fund; Academy of Finland","keywords":"Biology; Diamino acid; 16S ribosomal RNA; Phylogenetic tree; Peptidoglycan; Strain (injury); Genome size; rpoB; Phylogenetics; Whole genome sequencing; Ribosomal RNA; Microbiology; Bacteria; Genome; Botany; Gene; Genetics; Gene sequence; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003850699,0.0001994724,0.0004107287,0.0001148122,0.00007052864,0.00002865911,0.0003370896,0.0001276276,0.00002650486],"category_scores_gemma":[0.00006646993,0.0001401924,0.0001079076,0.00003380608,0.0001490901,0.000004590736,0.0001346605,0.0001007509,0.00001098769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004014596,"about_ca_system_score_gemma":0.00008431706,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009762662,"about_ca_topic_score_gemma":0.00005127202,"domain_scores_codex":[0.9986949,0.000152345,0.0006108673,0.0002264005,0.000109273,0.0002062064],"domain_scores_gemma":[0.9987662,0.00005783766,0.0004581198,0.0001714487,0.0004712413,0.00007513114],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004325797,0.00008897847,0.007893524,0.0005414067,0.001053122,0.00001708182,0.000137665,0.0002744316,0.98858,0.0001755971,0.0007625414,0.00004300301],"study_design_scores_gemma":[0.0393033,0.0228959,0.3253883,0.01537781,0.003044236,0.1227557,0.00483179,0.002472543,0.09741925,0.003849101,0.3558763,0.006785856],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924951,0.003577197,0.002438857,0.0003883699,0.0005706772,0.0002069892,0.0001516827,0.000002769295,0.0001684013],"genre_scores_gemma":[0.9950907,0.0003345747,0.00340035,0.0002447529,0.0005709498,0.00001032562,0.0001003195,0.00001726408,0.0002307959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8911608,"threshold_uncertainty_score":0.5716879,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008353193860808517,"score_gpt":0.2132379117195557,"score_spread":0.2048847178587472,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}