{"id":"W1987157611","doi":"10.1021/bi900184j","title":"Peptide Models of Membrane Protein Folding","year":2009,"lang":"en","type":"article","venue":"Biochemistry","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Membrane protein; Transmembrane protein; Folding (DSP implementation); Computational biology; Peptide; Protein folding; Peptide sequence; Helix (gastropod); Membrane; Biochemistry; Transmembrane domain; Rational design; Amino acid; Biology; Chemistry; Biophysics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001642769,0.0004873145,0.0003116386,0.0002235442,0.0002990895,0.0004764466,0.0004233703,0.0006681586,0.001663735],"category_scores_gemma":[0.0002502037,0.0001381962,0.0003256826,0.0003494241,0.0004159283,0.0006928804,0.0003428796,0.0004780386,0.0006900412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002712081,"about_ca_system_score_gemma":0.0002140459,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002963145,"about_ca_topic_score_gemma":0.00019286,"domain_scores_codex":[0.9999377,0.00002156248,0.000004139533,0.00001054043,0.00001940726,0.000006615101],"domain_scores_gemma":[0.9999487,0.00001815742,0.00001044054,0.000006286321,0.000009116551,0.000007220842],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.000155761,0.00005848407,0.0002806304,0.0004545482,0.00001965978,0.0005554206,0.0002398767,0.3156927,0.1177162,0.5453999,0.001938878,0.01748788],"study_design_scores_gemma":[0.00008082515,0.0003655542,0.0003003256,0.00006165729,0.0000186632,0.0003517302,0.0001055561,0.6070521,0.01894085,0.3236498,0.04904425,0.00002875057],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.308047,0.02155011,0.5749546,0.003341421,0.000598067,0.0002393465,0.0009275667,0.0005047332,0.08983721],"genre_scores_gemma":[0.8667175,0.01705293,0.09513663,0.0004255222,0.0001655274,0.0004945882,0.0006360223,0.00009134406,0.0192799],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.001663735,"threshold_uncertainty_score":0.005565763,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01019910738718532,"score_gpt":0.2388456244807193,"score_spread":0.228646517093534,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}