{"id":"W1987240370","doi":"10.1093/gbe/evq014","title":"The Exceptionally Large Chloroplast Genome of the Green Alga Floydiella terrestris Illuminates the Evolutionary History of the Chlorophyceae","year":2010,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Chloroplast DNA; Group II intron; Genetics; Inverted repeat; Lineage (genetic); Chlorophyceae; Group I catalytic intron; Phylogenetic tree; Gene; Intron; Evolutionary biology; Botany; RNA splicing; Algae; Chlorophyta; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003537385,0.000158692,0.0001435549,0.00001705981,0.0004983015,0.000003755731,0.0005175199,0.0001966712,0.00001454698],"category_scores_gemma":[0.00008129252,0.00007599583,0.0001498876,0.00007464334,0.001444803,0.000001576036,0.0004796414,0.0001925088,0.00000251335],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004015996,"about_ca_system_score_gemma":0.0001741584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000153515,"about_ca_topic_score_gemma":0.0004616314,"domain_scores_codex":[0.9989914,0.0001338238,0.0002726513,0.0002528429,0.00009268888,0.0002565674],"domain_scores_gemma":[0.9990057,0.0000578485,0.0002335609,0.0005433324,0.0001303573,0.00002920512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006624903,0.00003332862,0.05421902,0.00001033284,0.0001032369,6.80251e-8,0.0002215964,0.00001822427,0.9428182,0.001833301,0.0003909519,0.0002854744],"study_design_scores_gemma":[0.0002169926,0.0001059436,0.8471521,0.000002944518,0.00003620957,0.00001553483,0.0001159425,0.0000268727,0.001499308,0.001186242,0.1495446,0.00009735812],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.980568,0.01661673,0.00004101263,0.0008202055,0.001088503,0.0002638942,0.0001268841,0.000002243635,0.0004725308],"genre_scores_gemma":[0.9970404,0.0009762967,0.00003058847,0.0001012715,0.0003563902,0.00002659223,0.00002384358,0.00001054193,0.001434088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9413189,"threshold_uncertainty_score":0.5323437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00471694963921484,"score_gpt":0.1894076661578661,"score_spread":0.1846907165186513,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}