{"id":"W1987266449","doi":"10.1371/journal.pone.0115175","title":"Bacterial Bile Metabolising Gene Abundance in Crohn's, Ulcerative Colitis and Type 2 Diabetes Metagenomes","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":150,"is_retracted":false,"has_abstract":true,"ca_institutions":"Micropharma (Canada)","funders":"","keywords":"Metagenomics; Microbiome; Biology; Gene; Ulcerative colitis; Inflammatory bowel disease; Firmicutes; Genetics; Bile acid; Population; Microbiology; Disease; Medicine; Internal medicine; Endocrinology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004685578,0.0003734939,0.0008008983,0.001635998,0.0003554991,0.0009644479,0.0001622781,0.0003324328,0.0007769131],"category_scores_gemma":[0.001122634,0.0001973816,0.0009468537,0.001827375,0.0001719789,0.0002362757,0.0008153831,0.0003139593,0.0001454377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002580866,"about_ca_system_score_gemma":0.0002744837,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002552042,"about_ca_topic_score_gemma":0.002842587,"domain_scores_codex":[0.9995373,0.00008608729,0.00003657423,0.0001676829,0.00007033172,0.0001020447],"domain_scores_gemma":[0.9996363,0.0001042224,0.0001038186,0.00004346511,0.00004899775,0.000063295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001821583,0.0001003544,0.8185087,0.0002791187,0.001535999,0.0002136591,0.0004832027,0.001045656,0.1580491,0.0001059174,0.0002462823,0.01761035],"study_design_scores_gemma":[0.00001141624,0.0001707434,0.9942399,0.00001683964,0.0002772153,0.0002408272,0.00035151,0.001225921,0.002596411,0.0001086433,0.0007478955,0.0000125977],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956366,0.0007636136,0.0004153349,0.00003422242,0.000004469829,0.000008807177,0.002944589,0.00001493783,0.0001773],"genre_scores_gemma":[0.9899712,0.0003510797,0.001844441,0.00007362371,0.000009023906,0.00003182683,0.00746515,0.00001552581,0.0002380974],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002552042,"threshold_uncertainty_score":0.005074382,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01775425075085179,"score_gpt":0.2290803291489199,"score_spread":0.2113260783980681,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}