{"id":"W1987336883","doi":"10.1099/mic.0.033522-0","title":"Genotyping of Mycobacterium avium complex organisms using multispacer sequence typing","year":2009,"lang":"en","type":"article","venue":"Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Mycobacterium avium complex; Genotyping; Biology; Typing; Multilocus sequence typing; Mycobacterium; Microbiology; Computational biology; Sequence (biology); Mycobacterium tuberculosis complex; Genetics; Sequence analysis; Bacteria; Genotype; Mycobacterium tuberculosis; Gene; Tuberculosis; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007110917,0.0003423448,0.0003750203,0.001210128,0.000130092,0.0003187684,0.0003544451,0.0005122118,0.0005784503],"category_scores_gemma":[0.001361108,0.0001780186,0.0003845131,0.0005447577,0.0001741963,0.0001996383,0.0002993642,0.0002520831,0.0003633893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001537146,"about_ca_system_score_gemma":0.00012041,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008088224,"about_ca_topic_score_gemma":0.001586293,"domain_scores_codex":[0.9989045,0.0002391918,0.00009959555,0.0003185757,0.000346375,0.00009176064],"domain_scores_gemma":[0.9990362,0.0003285205,0.0002867274,0.0001244063,0.000134622,0.00008955967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002242559,0.00009381753,0.0434388,0.00008671839,0.00003791244,0.00009829349,0.000109172,0.0004619019,0.9364021,0.00004598745,0.0000540746,0.01894695],"study_design_scores_gemma":[0.00006550044,0.002587443,0.4183664,0.00006325266,0.0001859037,0.002508604,0.0002137202,0.01142304,0.5603614,0.0001603752,0.004002809,0.00006148076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9830462,0.0005404032,0.01483807,0.00003306146,0.00002012839,0.00008900515,0.0007616594,0.00009719889,0.0005742427],"genre_scores_gemma":[0.9421543,0.0004288502,0.05441695,0.00005855594,0.00001968886,0.00008893566,0.002140819,0.00002279791,0.0006691053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001210128,"threshold_uncertainty_score":0.003760695,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07689068647738714,"score_gpt":0.3440896171668036,"score_spread":0.2671989306894165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}