{"id":"W1987336883","doi":"10.1099/mic.0.033522-0","title":"Genotyping of Mycobacterium avium complex organisms using multispacer sequence typing","year":2009,"lang":"en","type":"article","venue":"Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Mycobacterium avium complex; Genotyping; Biology; Typing; Multilocus sequence typing; Mycobacterium; Microbiology; Computational biology; Sequence (biology); Mycobacterium tuberculosis complex; Genetics; Sequence analysis; Bacteria; Genotype; Mycobacterium tuberculosis; Gene; Tuberculosis; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001579446,0.0001612067,0.0004181502,0.0001427851,0.00006930828,0.00001124434,0.0001224312,0.0001563363,0.0007786494],"category_scores_gemma":[0.0001320771,0.000143183,0.00008752397,0.0001983071,0.0001451293,0.0000563001,0.000066127,0.0001841123,0.00007106517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001068401,"about_ca_system_score_gemma":0.0001347521,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001288308,"about_ca_topic_score_gemma":0.000009976262,"domain_scores_codex":[0.9988108,0.00008055192,0.000296733,0.0002898176,0.00004795517,0.0004741423],"domain_scores_gemma":[0.9992224,0.00006571838,0.0001065507,0.0002921545,0.0001784151,0.0001347814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001355293,0.00007975557,0.01089543,0.00006444563,0.00003306134,0.00002836346,0.0001266278,0.000003221314,0.9868222,0.00006582615,0.0005706025,0.001174928],"study_design_scores_gemma":[0.002171697,0.0009436784,0.1938481,0.0002859583,0.0001165363,0.001167799,0.0001065589,0.0004023088,0.7866486,0.00007744567,0.01383884,0.0003924629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971976,0.0002358262,0.0007825348,0.0008636077,0.0001676725,0.0002765447,0.00004542714,0.00004903637,0.0003817666],"genre_scores_gemma":[0.9881174,0.00006786921,0.01012548,0.001289031,0.0001410231,0.000002218029,0.0001380507,0.00001629854,0.0001026398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2001736,"threshold_uncertainty_score":0.8525664,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07689068647738714,"score_gpt":0.3440896171668036,"score_spread":0.2671989306894165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}