{"id":"W1987689210","doi":"10.1111/j.1529-8817.2008.00510.x","title":"DEEP DIVISION IN THE CHLOROPHYCEAE (CHLOROPHYTA) REVEALED BY CHLOROPLAST PHYLOGENOMIC ANALYSES<sup>1</sup>","year":2008,"lang":"en","type":"article","venue":"Journal of Phycology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Chlorophyceae; Monophyly; Botany; Clade; Phylogenetic tree; Chlorophyta; Gene; Algae; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004765246,0.0002159974,0.0004000745,0.0001496355,0.0002006632,0.00001568146,0.0007213199,0.0002474901,0.0001494096],"category_scores_gemma":[0.0001229005,0.0001628022,0.0002719343,0.0002274628,0.0002372627,0.00001318941,0.0001399022,0.0003906547,0.00002683965],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004619401,"about_ca_system_score_gemma":0.0001143287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002923848,"about_ca_topic_score_gemma":0.00001864637,"domain_scores_codex":[0.9982925,0.0003211636,0.0004949642,0.0002672236,0.0002477376,0.0003764287],"domain_scores_gemma":[0.9989834,0.00007008551,0.0003763643,0.0003212512,0.0001446169,0.000104238],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001332877,0.0008556583,0.1475667,0.00003429962,0.0003761235,0.000710929,0.001109302,0.006600572,0.8162993,0.00004223859,0.02287508,0.00219691],"study_design_scores_gemma":[0.01031719,0.0091428,0.8214394,0.00006097238,0.0003220098,0.005111911,0.00116979,0.00104209,0.09048057,0.000949577,0.05870668,0.001257039],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959363,0.001762587,0.001000051,0.0002458091,0.0001746785,0.0001786583,0.00001870207,0.000002954669,0.0006802276],"genre_scores_gemma":[0.997529,0.000726262,0.0002802574,0.0008508885,0.0004335527,0.00000512595,0.0000314112,0.00001608431,0.0001274398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7258187,"threshold_uncertainty_score":0.6638881,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02056261063758608,"score_gpt":0.2626302214652078,"score_spread":0.2420676108276217,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}