{"id":"W1987838948","doi":"10.1128/genomea.01430-14","title":"Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Thompson Rivers University","funders":"Universiteit Hasselt","keywords":"Strain (injury); Phytoremediation; Whole genome sequencing; Diesel fuel; Biology; Plume; Gammaproteobacteria; Genome; Contamination; Botany; Microbiology; Bacteria; Gene; Ecology; Genetics; Chemistry; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002879028,0.0003607929,0.0004052473,0.0002225445,0.0001181508,0.00006724067,0.0002202533,0.0001494345,0.0000442938],"category_scores_gemma":[0.00003354091,0.0003446607,0.00006309708,0.0002961519,0.00008617655,0.0004585485,0.00007760585,0.000263621,0.00003832314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002262503,"about_ca_system_score_gemma":0.00003021991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002166783,"about_ca_topic_score_gemma":0.00001706912,"domain_scores_codex":[0.9981663,0.0000615173,0.0004670885,0.0004779853,0.0003401724,0.0004868883],"domain_scores_gemma":[0.9992741,0.00003024303,0.0001182113,0.0002664534,0.000116006,0.0001950084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001214701,0.00005885772,0.002453956,0.0002165307,0.0002455516,0.00003903979,0.005775367,0.000276425,0.9900454,0.000009195144,0.00004200003,0.0007162237],"study_design_scores_gemma":[0.06333887,0.01466242,0.1445817,0.006941813,0.002386968,0.000532285,0.0493676,0.2339798,0.3003683,0.002990086,0.1646827,0.01616746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958059,0.0009495452,0.000271073,0.0001242566,0.0004977185,0.0003890631,0.001442667,0.0002048436,0.0003149623],"genre_scores_gemma":[0.9982067,0.0002434184,0.0002301332,0.00009177466,0.0001453833,0.00001492453,0.0008913103,0.00004261885,0.0001336816],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6896771,"threshold_uncertainty_score":0.9999005,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02643537435277296,"score_gpt":0.2124295364760742,"score_spread":0.1859941621233013,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}