{"id":"W1987925431","doi":"10.1016/j.cyto.2015.03.003","title":"Unique cytokine and chemokine patterns in bronchoalveolar lavage are associated with specific causative pathogen among HIV infected patients with pneumonia, in Medellin, Colombia","year":2015,"lang":"en","type":"article","venue":"Cytokine","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba","funders":"Manitoba Medical Service Foundation; Universidad de Antioquia; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Bronchoalveolar lavage; Chemokine; Medicine; Cytokine; Immunology; Pneumonia; Bacterial pneumonia; Eotaxin; Internal medicine; Inflammation; Lung","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003128622,0.0005548325,0.0009545625,0.0004985043,0.00006588502,0.00004683917,0.0001074432,0.0002567965,0.000038528],"category_scores_gemma":[0.0001870674,0.0004304338,0.00005147003,0.0008969534,0.0001825157,0.0002254116,0.00008144404,0.0006258757,0.00001284737],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000977956,"about_ca_system_score_gemma":0.0001384676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004165687,"about_ca_topic_score_gemma":0.007104195,"domain_scores_codex":[0.9972133,0.0002135931,0.0005852517,0.0007642295,0.0006215233,0.0006021004],"domain_scores_gemma":[0.9981741,0.000127581,0.0003814599,0.0004411162,0.0004011291,0.0004745725],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001048261,0.001351631,0.991884,0.00003878026,0.0001417228,0.00142391,0.0007659576,0.00007880064,0.002871615,0.00000496069,0.00006469406,0.0003256499],"study_design_scores_gemma":[0.02087604,0.001949823,0.9716572,0.0008453329,0.0001129138,0.00005460263,0.0002256824,0.0002055882,0.003124932,0.00001569642,0.0004776114,0.0004545927],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970118,0.00008409251,0.00007348799,0.0003476777,0.00005715898,0.001562964,0.0003652535,0.0001415522,0.0003560453],"genre_scores_gemma":[0.9983687,0.00007825045,0.00008529609,0.0001576525,0.00004326888,0.0001526057,0.0007626701,0.00009701296,0.0002545275],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02022684,"threshold_uncertainty_score":0.9998147,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01230034019066615,"score_gpt":0.2122657968674419,"score_spread":0.1999654566767757,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}