{"id":"W1988047282","doi":"10.1099/vir.0.045930-0","title":"Genomic reassortment of influenza A virus in North American swine, 1998–2011","year":2012,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Fogarty International Center; National Institute of Allergy and Infectious Diseases; U.S. Department of Agriculture; U.S. Public Health Service; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Reassortment; Biology; Neuraminidase; Virology; Genome; Phylogenetic tree; Genetics; Antigenic shift; Viral phylodynamics; Influenza A virus; Virus; Gene; Evolutionary biology; Antigenic drift; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006938081,0.0001729985,0.0008265519,0.0005283644,0.00003294255,0.000003169396,0.0001682358,0.00006567594,0.0000692679],"category_scores_gemma":[0.0001816519,0.0001298364,0.0001754016,0.0002557225,0.0002929813,0.0001150091,0.0001173713,0.0004859555,0.00004355722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002411077,"about_ca_system_score_gemma":0.0001650018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005861724,"about_ca_topic_score_gemma":0.0004781361,"domain_scores_codex":[0.9978421,0.000180864,0.0009011795,0.0001226197,0.0003831584,0.0005700535],"domain_scores_gemma":[0.9986843,0.00008299591,0.0005934895,0.0002275384,0.0001571068,0.0002545903],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001830137,0.0004124712,0.868971,0.00002604135,0.0002817668,0.00008535045,0.0005323359,0.0001295041,0.1237937,0.00003039233,0.0009450598,0.002962209],"study_design_scores_gemma":[0.002121186,0.001749472,0.9728277,0.00001065065,0.00008547035,0.0002161293,0.00004603186,0.00002608971,0.003456743,0.00001303158,0.01935378,0.00009365098],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955757,0.003376847,0.00001009572,0.0003466943,0.0001677933,0.0001790749,0.00001107526,0.000005005411,0.0003276911],"genre_scores_gemma":[0.9943604,0.001049311,0.001632965,0.002207868,0.0006505164,0.000008251875,0.000001619848,0.00002141244,0.00006769272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.120337,"threshold_uncertainty_score":0.5294574,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05971358079549451,"score_gpt":0.364376356042101,"score_spread":0.3046627752466065,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}