{"id":"W1988159303","doi":"10.1016/j.shpsc.2004.12.002","title":"Paradigm change in evolutionary microbiology","year":2005,"lang":"en","type":"article","venue":"Studies in History and Philosophy of Science Part C Studies in History and Philosophy of Biological and Biomedical Sciences","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Economic and Social Research Council; Canadian Institutes of Health Research; Genome Atlantic","keywords":"Evolutionary biology; Computational biology; Biology; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.001372076,0.0002222248,0.0005211316,0.0003452675,0.0001923233,0.000001554568,0.0002876846,0.000172082,0.00001264511],"category_scores_gemma":[0.0002930031,0.0001632473,0.00004823136,0.000370588,0.04568499,0.00003249612,0.0004242506,0.0001532155,4.825386e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001914218,"about_ca_system_score_gemma":0.00009931137,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002370964,"about_ca_topic_score_gemma":0.00006597819,"domain_scores_codex":[0.998007,0.0001414502,0.0005723415,0.0007266634,0.0001913205,0.0003611987],"domain_scores_gemma":[0.9993931,0.0001330948,0.0001801719,0.0001289118,0.00005529043,0.0001094123],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002198704,0.004273003,0.5285175,0.002491341,0.0003809293,0.00009671455,0.05444677,0.0001082945,0.1243652,0.2459998,0.005886276,0.0312355],"study_design_scores_gemma":[0.007263114,0.01607517,0.1501098,0.002477014,0.0000899592,0.0003212423,0.007049197,0.0009827542,0.0008436783,0.3578873,0.4537329,0.003167928],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7293515,0.2658688,0.000001552034,0.002544165,0.0006442474,0.0001870304,0.00001920002,0.000004015445,0.001379497],"genre_scores_gemma":[0.9594619,0.0393909,0.0004054873,0.0004454896,0.0002401993,0.00002999207,0.000005111705,0.000002570015,0.0000182981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4478466,"threshold_uncertainty_score":0.9569121,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1346667391980517,"score_gpt":0.333133492603272,"score_spread":0.1984667534052202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}