{"id":"W1988392464","doi":"10.1055/s-2009-1216437","title":"Integration of Gene-to-Metabolite Networks for Understanding Global Responses of Phenolic Acids Biosynthesis in Salvia miltiorrhiza","year":2009,"lang":"en","type":"article","venue":"Planta Medica","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute on Drug Abuse; Agricultural Research Service; University of British Columbia; University of Illinois at Urbana-Champaign; Chinese Academy of Sciences; Kurukshetra University; University of Illinois at Chicago; National Oceanic and Atmospheric Administration; U.S. Food and Drug Administration; National Science Foundation of Sri Lanka; University of Colombo; U.S. Department of Agriculture; Western Carolina University; International Science Council; National Center for Complementary and Alternative Medicine; China Academy of Traditional Chinese Medicine; National Institutes of Health; National Center for Research Resources; National Institute of Allergy and Infectious Diseases; Türkiye Bilimsel ve Teknolojik Araştırma Kurumu; Hong Kong Polytechnic University; National Science Foundation; Deutsche Krebshilfe; National Natural Science Foundation of China; Tata Trusts; University Grants Commission; Wake Forest University","keywords":"Salvia miltiorrhiza; Rosmarinic acid; Methyl jasmonate; Metabolomics; Biosynthesis; Metabolic engineering; Metabolite; Metabolic pathway; Biology; Biochemistry; Traditional medicine; Gene; Computational biology; Chemistry; Traditional Chinese medicine; Medicine; Antioxidant; Bioinformatics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003534568,0.0001536136,0.0002706725,0.00007034485,0.00003139709,0.000006527295,0.0002263032,0.0002872373,0.000006398417],"category_scores_gemma":[0.0005136902,0.0001370649,0.00008991356,0.0001972787,0.00006060163,0.0000040651,0.00002409977,0.00006522668,4.949148e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003292368,"about_ca_system_score_gemma":0.0000733969,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000144457,"about_ca_topic_score_gemma":0.00002733399,"domain_scores_codex":[0.9989255,0.0000579046,0.0003490997,0.0002727713,0.0001476339,0.0002470986],"domain_scores_gemma":[0.9994144,0.0001022325,0.0001307508,0.0002207267,0.00003903624,0.00009280437],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00144949,0.00008100396,0.001912313,0.00002719166,0.00003884619,0.000002419537,0.00005078821,0.00001989885,0.9923302,0.0001431042,0.0004294361,0.003515316],"study_design_scores_gemma":[0.0003930439,0.0002158575,0.006977821,0.0001272903,0.00004622433,0.0000206662,0.0001891082,0.0002987572,0.9907303,0.000157556,0.000682735,0.0001606322],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9704103,0.0007667438,0.02676648,0.000342217,0.00009192092,0.0002360479,0.0009729564,0.000009733037,0.0004035563],"genre_scores_gemma":[0.9968135,0.000351772,0.002141193,0.0001757048,0.0001266927,0.000008405998,0.0003538829,0.000006450359,0.00002245215],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02640311,"threshold_uncertainty_score":0.5589343,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02422113700947125,"score_gpt":0.2703739363737963,"score_spread":0.246152799364325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}