{"id":"W1988392464","doi":"10.1055/s-2009-1216437","title":"Integration of Gene-to-Metabolite Networks for Understanding Global Responses of Phenolic Acids Biosynthesis in Salvia miltiorrhiza","year":2009,"lang":"en","type":"article","venue":"Planta Medica","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute on Drug Abuse; Agricultural Research Service; University of British Columbia; University of Illinois at Urbana-Champaign; Chinese Academy of Sciences; Kurukshetra University; University of Illinois at Chicago; National Oceanic and Atmospheric Administration; U.S. Food and Drug Administration; National Science Foundation of Sri Lanka; University of Colombo; U.S. Department of Agriculture; Western Carolina University; International Science Council; National Center for Complementary and Alternative Medicine; China Academy of Traditional Chinese Medicine; National Institutes of Health; National Center for Research Resources; National Institute of Allergy and Infectious Diseases; Türkiye Bilimsel ve Teknolojik Araştırma Kurumu; Hong Kong Polytechnic University; National Science Foundation; Deutsche Krebshilfe; National Natural Science Foundation of China; Tata Trusts; University Grants Commission; Wake Forest University","keywords":"Salvia miltiorrhiza; Rosmarinic acid; Methyl jasmonate; Metabolomics; Biosynthesis; Metabolic engineering; Metabolite; Metabolic pathway; Biology; Biochemistry; Traditional medicine; Gene; Computational biology; Chemistry; Traditional Chinese medicine; Medicine; Antioxidant; Bioinformatics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002351818,0.0002397221,0.0002978264,0.0003387204,0.0001448918,0.0003924073,0.000217301,0.0002523739,0.001518603],"category_scores_gemma":[0.0002189616,0.0001067558,0.0005167287,0.0003784374,0.0002229746,0.0003668331,0.0002077933,0.0004220745,0.000162809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004749645,"about_ca_system_score_gemma":0.0003056087,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001484406,"about_ca_topic_score_gemma":0.002198156,"domain_scores_codex":[0.9999307,0.00001075862,0.000002243572,0.00003152593,0.00001068496,0.00001397455],"domain_scores_gemma":[0.9998901,0.00005113673,0.0000311078,0.000008163334,0.000007593856,0.00001180704],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009127166,0.0002474335,0.01557406,0.0005085234,0.0001566402,0.0001214404,0.0001759525,0.01813637,0.9157994,0.004350438,0.000494397,0.04352267],"study_design_scores_gemma":[0.0001980803,0.002395383,0.4638086,0.0001195265,0.0006705929,0.000263553,0.000904485,0.3211776,0.1727922,0.02081566,0.01675168,0.0001024906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9509808,0.00356811,0.03807551,0.0007057369,0.00005000169,0.00009790761,0.003036842,0.0005676705,0.002917412],"genre_scores_gemma":[0.9796739,0.002179985,0.0148908,0.000188197,0.00002496387,0.0001101906,0.001614012,0.00003704095,0.001280821],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001518603,"threshold_uncertainty_score":0.005080223,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02422113700947125,"score_gpt":0.2703739363737963,"score_spread":0.246152799364325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}