{"id":"W1988395729","doi":"10.1371/journal.pone.0101787","title":"Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; Structural Genomics Consortium","funders":"Pacific Northwest National Laboratory; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; U.S. Department of Energy","keywords":"Biology; Salmonella; Multiple sequence alignment; Cysteine; Peptide sequence; Sequence alignment; Protein domain; Dimer; Function (biology); Protein structure; Biochemistry; Genetics; Gene; Chemistry; Bacteria; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006527123,0.00008707441,0.0001595266,0.00003390799,0.00002922821,0.000006582233,0.00004737925,0.0001697202,0.00001124754],"category_scores_gemma":[0.00003681858,0.00007954763,0.00001826758,0.00003961202,0.0001461529,0.000002401463,0.00008637634,0.00004489244,3.680944e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001970104,"about_ca_system_score_gemma":0.0000131877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005979371,"about_ca_topic_score_gemma":0.000005876961,"domain_scores_codex":[0.9994481,0.00002609803,0.0001643889,0.0001854764,0.00008032286,0.00009557264],"domain_scores_gemma":[0.9996225,0.000004693702,0.000113044,0.000151165,0.00007568645,0.00003287639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008140159,0.00007235235,0.006511358,0.00007586537,0.00006227883,8.021993e-8,0.00001162578,2.803842e-7,0.991846,0.0002678826,0.000001762729,0.00106911],"study_design_scores_gemma":[0.0003672685,0.0004468483,0.1161343,0.00002045128,0.00003062979,0.000003113839,0.000004146677,0.00009428131,0.8825042,0.0001289533,0.0001859785,0.00007979931],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992889,0.00008731146,0.0001934964,0.0001393787,0.00002815535,0.0001665564,0.00004040341,0.000005215752,0.00005063604],"genre_scores_gemma":[0.9983596,0.0002072023,0.001076102,0.0000289188,0.0001170929,0.000006629287,0.0001223173,0.000009674924,0.00007249508],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.109623,"threshold_uncertainty_score":0.3243858,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01198025738919574,"score_gpt":0.1804594709628492,"score_spread":0.1684792135736534,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}