{"id":"W1988395729","doi":"10.1371/journal.pone.0101787","title":"Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; Structural Genomics Consortium","funders":"Pacific Northwest National Laboratory; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; U.S. Department of Energy","keywords":"Biology; Salmonella; Multiple sequence alignment; Cysteine; Peptide sequence; Sequence alignment; Protein domain; Dimer; Function (biology); Protein structure; Biochemistry; Genetics; Gene; Chemistry; Bacteria; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001120826,0.0001969293,0.0001631853,0.0001481939,0.0001238849,0.000123785,0.0001953298,0.0002021169,0.0004134334],"category_scores_gemma":[0.0002046676,0.00008822986,0.0002870814,0.0001520626,0.0001422474,0.0001234581,0.0001135231,0.0002476079,0.0001505457],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003186694,"about_ca_system_score_gemma":0.0001217838,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001745022,"about_ca_topic_score_gemma":0.001290804,"domain_scores_codex":[0.9999479,0.000009956964,0.000004943154,0.00001103239,0.00001501653,0.00001115579],"domain_scores_gemma":[0.9998826,0.00002413677,0.00003089473,0.0000112191,0.00002110767,0.00003009831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002209153,0.00006628483,0.003844962,0.00008291683,0.00001266118,0.0001951476,0.0001086603,0.0003432863,0.9925749,0.0001286463,0.00006650252,0.002355071],"study_design_scores_gemma":[0.00004848506,0.0004646239,0.1712672,0.00003278811,0.00006177187,0.002206105,0.0004385379,0.008757447,0.8103561,0.0001601516,0.006182736,0.00002401801],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990482,0.0003174087,0.0002647833,0.00002272884,0.000002218257,0.000004099723,0.0001463873,0.000003530954,0.0001906854],"genre_scores_gemma":[0.9971961,0.0001833421,0.001096881,0.00002688235,0.000003082963,0.000007244083,0.001126652,0.000005192332,0.0003546189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001745022,"threshold_uncertainty_score":0.003469765,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01198025738919574,"score_gpt":0.1804594709628492,"score_spread":0.1684792135736534,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}