{"id":"W1988437811","doi":"10.1371/journal.pone.0073066","title":"Multilocus Sequence Typing of Borrelia burgdorferi Suggests Existence of Lineages with Differential Pathogenic Properties in Humans","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Multilocus sequence typing; Borrelia burgdorferi; Biology; Typing; Lyme disease; Genetics; Population; Borrelia; Intergenic region; Microbiology; Virology; Genotype; Genome; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005069852,0.0001596105,0.000395033,0.0001090179,0.00004261084,0.000007084458,0.0001853655,0.0001155044,0.0003425678],"category_scores_gemma":[0.0001299897,0.0001231667,0.0000480184,0.0001225485,0.0003596749,0.0001111733,0.00006524003,0.0001744427,0.00006064194],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002904626,"about_ca_system_score_gemma":0.00006617143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001133359,"about_ca_topic_score_gemma":0.000236929,"domain_scores_codex":[0.9990054,0.0001136958,0.0003363763,0.0002394002,0.00005462033,0.0002504951],"domain_scores_gemma":[0.9992475,0.00006136329,0.0001733872,0.0002903814,0.000207635,0.00001974827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001079517,0.001409548,0.1363509,0.0002035364,0.0001935798,0.000002198331,0.0003894863,0.000007465394,0.8610646,0.00002696931,0.000006624484,0.0002371394],"study_design_scores_gemma":[0.0008823753,0.0004962018,0.3418377,0.0007619952,0.0001165979,0.00000440128,0.0001338181,0.00003528275,0.6555266,0.00002393287,0.000002885292,0.0001781727],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978215,0.001492456,0.00001232094,0.00002639343,0.00005409338,0.000441709,0.00002623131,0.00004928461,0.00007599087],"genre_scores_gemma":[0.9993524,0.0001065797,0.0001200795,0.00001259451,0.00001412087,0.00009665598,0.00002067823,0.00001840548,0.0002585113],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.205538,"threshold_uncertainty_score":0.5022592,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04204373941518794,"score_gpt":0.2253204591182474,"score_spread":0.1832767197030594,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}