{"id":"W1988713449","doi":"10.1016/s1672-0229(10)60018-6","title":"A Novel Interpretation of Structural Dot Plots of Genomes Derived from the Analysis of Two Strains of <i>Neisseria Meningitidis</i>","year":2010,"lang":"en","type":"article","venue":"Genomics Proteomics & Bioinformatics","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University; Canadian Science Centre for Human and Animal Health; University of Manitoba; Public Health Agency of Canada","funders":"Health Canada; Mitacs; Public Health Agency; Public Health Agency of Canada","keywords":"Neisseria meningitidis; Virulence; Genome; Biology; Gene; Locus (genetics); Genetics; Neisseria; Whole genome sequencing; Pathogenicity island; Strain (injury); Meningococcal disease; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002445756,0.0001696307,0.0005923736,0.0002522082,0.00006666052,0.00001162089,0.0003406057,0.000171483,0.0001029967],"category_scores_gemma":[0.00006269627,0.0001279697,0.0002368746,0.0003749082,0.0002681263,0.000129292,0.0001231367,0.0001982319,0.000002133712],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001696973,"about_ca_system_score_gemma":0.0001150743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005287269,"about_ca_topic_score_gemma":0.0004778816,"domain_scores_codex":[0.9985731,0.00003482084,0.001097188,0.0001064096,0.00002596523,0.0001625534],"domain_scores_gemma":[0.9979052,0.0001011781,0.001286979,0.0004296808,0.0002610111,0.00001596227],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001363216,0.00004370716,0.003136389,0.00004492662,0.001192428,1.009658e-8,0.005202301,0.0005717467,0.9866518,0.001063507,0.000002420476,0.001954443],"study_design_scores_gemma":[0.001225874,0.0001374096,0.03395768,0.00002629461,0.0009455625,0.000005869995,0.0009903503,0.008100105,0.9540586,0.0003424938,0.00004898551,0.0001607911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911846,0.00009557176,0.00625411,0.00001875715,0.0003705757,0.0004225707,0.001592639,0.00001005019,0.00005112772],"genre_scores_gemma":[0.9722239,0.00003641272,0.02727151,0.00001021593,0.00001696022,0.000008527538,0.0004154138,0.00001125047,0.000005786236],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03259321,"threshold_uncertainty_score":0.5218452,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01051204866013112,"score_gpt":0.2422288098212799,"score_spread":0.2317167611611488,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}