{"id":"W1989027782","doi":"10.1142/s0219720012410016","title":"IDENTIFICATION OF SHORTENED 3′ UNTRANSLATED REGIONS FROM EXPRESSION ARRAYS","year":2012,"lang":"en","type":"article","venue":"Journal of Bioinformatics and Computational Biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Cancer Research; Ligue Contre le Cancer; Institut National Du Cancer; European Commission","keywords":"RefSeq; Computational biology; Biology; DNA microarray; Genetics; Gene; Untranslated region; splice; Alternative splicing; Exon; Three prime untranslated region; Gene expression; Genome; Messenger RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009205496,0.00064241,0.001023269,0.00108778,0.0003411506,0.0006921475,0.0006077274,0.0003449487,0.001472797],"category_scores_gemma":[0.002977784,0.0004118304,0.001315618,0.001528921,0.000277367,0.0003508846,0.0005366154,0.0008119248,0.001010221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003237854,"about_ca_system_score_gemma":0.0009610627,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000700629,"about_ca_topic_score_gemma":0.00158079,"domain_scores_codex":[0.9991547,0.0001484633,0.00008625662,0.0003018334,0.0002371746,0.00007160534],"domain_scores_gemma":[0.9987206,0.0006581093,0.0001722008,0.0002259783,0.0001892356,0.00003392286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001005996,0.0001223706,0.01578513,0.0005772994,0.0002926859,0.0003769726,0.0001887897,0.02881978,0.812169,0.002626905,0.00174918,0.1362858],"study_design_scores_gemma":[0.0001529758,0.0008224604,0.07182117,0.00005507806,0.0005837835,0.000655494,0.0001729077,0.3213164,0.5720935,0.009370363,0.02284518,0.0001105956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3381599,0.000682728,0.6451846,0.0001493666,0.00006487055,0.0002727953,0.01004893,0.003730141,0.001706778],"genre_scores_gemma":[0.3187481,0.0006170003,0.6409817,0.0002113643,0.00005716688,0.001081493,0.03559845,0.0006482967,0.002056449],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.001472797,"threshold_uncertainty_score":0.004927039,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01353372281945734,"score_gpt":0.2781129177715012,"score_spread":0.2645791949520438,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}