{"id":"W1989027782","doi":"10.1142/s0219720012410016","title":"IDENTIFICATION OF SHORTENED 3′ UNTRANSLATED REGIONS FROM EXPRESSION ARRAYS","year":2012,"lang":"en","type":"article","venue":"Journal of Bioinformatics and Computational Biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Cancer Research; Ligue Contre le Cancer; Institut National Du Cancer; European Commission","keywords":"RefSeq; Computational biology; Biology; DNA microarray; Genetics; Gene; Untranslated region; splice; Alternative splicing; Exon; Three prime untranslated region; Gene expression; Genome; Messenger RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002786286,0.00006154549,0.0001283069,0.00007399706,0.0000432042,0.000009355574,0.00008766889,0.00008212798,0.000005316923],"category_scores_gemma":[0.00005294962,0.00004699242,0.00005471792,0.00004993133,0.00006975135,0.00001781241,0.00002736399,0.00006620013,0.000001070844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004445012,"about_ca_system_score_gemma":0.00004572774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003887681,"about_ca_topic_score_gemma":6.509264e-7,"domain_scores_codex":[0.9992246,0.00003752011,0.0004806658,0.00004411395,0.00009872816,0.0001143519],"domain_scores_gemma":[0.9992726,0.00004340746,0.0003469835,0.00006770129,0.0001851189,0.00008414693],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001021494,0.00005315581,0.004942665,0.00001466845,0.00007512645,2.45299e-7,0.0002291663,0.0007046015,0.9885463,0.0007830334,0.0002951156,0.004253846],"study_design_scores_gemma":[0.004189615,0.001988628,0.1083557,0.0001934858,0.0001401389,0.0003095969,0.0014131,0.07451759,0.7877064,0.01521767,0.005359727,0.000608434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8294272,0.0006863848,0.1695864,0.0001191969,0.00007756365,0.00004028379,0.00002450292,0.00000118173,0.00003723161],"genre_scores_gemma":[0.9888796,0.0002177675,0.01062317,0.00005541678,0.0001014633,7.442486e-7,0.0001058613,0.000003418304,0.00001258287],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2008399,"threshold_uncertainty_score":0.1916295,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01353372281945734,"score_gpt":0.2781129177715012,"score_spread":0.2645791949520438,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}