{"id":"W1989100130","doi":"10.1371/journal.pone.0062204","title":"Bioinformatics Analysis Identify Novel OB Fold Protein Coding Genes in C. elegans","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Machine Learning in Bioinformatics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Caenorhabditis elegans; Biology; In silico; Gene; Genetics; Computational biology; Gene prediction; Genome project; Genome; Protein sequencing; Annotation; Genomics; Sequence analysis; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002186039,0.0001792073,0.0002682062,0.0002216236,0.00006022804,0.00009814695,0.0002843043,0.0001635707,0.0001228298],"category_scores_gemma":[0.0002000816,0.000171849,0.0001034044,0.000429936,0.00004314664,0.00002278824,0.0001634944,0.000172392,0.0001182839],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002293222,"about_ca_system_score_gemma":0.00003377343,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001211904,"about_ca_topic_score_gemma":0.0000992044,"domain_scores_codex":[0.9987045,0.000027371,0.0004969339,0.0001792817,0.0002783048,0.0003136242],"domain_scores_gemma":[0.9991441,0.00001281997,0.000200168,0.0004444473,0.000117016,0.00008140367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001436254,0.0006370437,0.03438056,0.0003469791,0.0008941813,7.735848e-7,0.0002417936,0.0004679144,0.9618455,0.0001160482,0.0002144954,0.0008403094],"study_design_scores_gemma":[0.00181359,0.0003798943,0.02825057,0.0002138105,0.00059504,0.0000044711,0.0004333842,0.2629412,0.7024902,0.00007155265,0.001846808,0.0009595043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9855225,0.00003623527,0.008861812,0.0001599946,0.00001541664,0.002447559,0.00001437733,0.000032571,0.002909538],"genre_scores_gemma":[0.9251768,0.00002426121,0.07169686,0.0001872693,0.00009426457,0.001144012,0.00021155,0.00002711994,0.001437865],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2624733,"threshold_uncertainty_score":0.70078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02263115134143695,"score_gpt":0.2433432518983985,"score_spread":0.2207121005569616,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}