{"id":"W1989225449","doi":"10.1021/pr9006427","title":"Pneumococcal Pneumonia: Potential for Diagnosis through a Urinary Metabolic Profile","year":2009,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of Alberta; Mount Sinai Hospital","funders":"","keywords":"Pneumonia; Streptococcus pneumoniae; Community-acquired pneumonia; Urinary system; Microbiology; Urine; Pathogen; Antimicrobial; Bacterial pneumonia; Pneumococcal pneumonia; Pathogenic bacteria; Respiratory tract; Metabolomics; Respiratory tract infections; Biology; Immunology; Bacteria; Medicine; Respiratory system; Internal medicine; Antibiotics; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00182547,0.0001772428,0.0005658646,0.0006048897,0.00038982,0.00006989146,0.0002502522,0.0001900132,0.0001475244],"category_scores_gemma":[0.0006068271,0.0001272062,0.0004737274,0.000706612,0.0001570776,0.0003425424,0.00005320898,0.001242437,0.00004989077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001362202,"about_ca_system_score_gemma":0.0006972445,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004674165,"about_ca_topic_score_gemma":5.245396e-7,"domain_scores_codex":[0.9971266,0.0002595536,0.0006470638,0.0002407246,0.001061569,0.0006644729],"domain_scores_gemma":[0.9975714,0.0001728616,0.0002151983,0.0002911743,0.00140003,0.0003493126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008495402,0.002614721,0.004177428,0.0002101977,0.000252609,0.0009331905,0.0002815549,0.00001528303,0.9770883,0.0005294601,0.002468783,0.01057892],"study_design_scores_gemma":[0.01081331,0.04335363,0.4109319,0.001049933,0.0006285988,0.0141544,0.0007437495,0.000339159,0.1239304,0.01255326,0.3808335,0.0006681691],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9676716,0.001428666,0.001443706,0.02456849,0.0003242939,0.002780803,0.0000187434,0.00003859368,0.001725103],"genre_scores_gemma":[0.9934266,0.000675718,0.002624752,0.0002619376,0.001777283,0.0003576382,0.000002749543,0.00003214796,0.0008411576],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8531579,"threshold_uncertainty_score":0.539784,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08318439568936047,"score_gpt":0.4251161093894762,"score_spread":0.3419317137001157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}