{"id":"W1989277387","doi":"10.1093/nar/gkv1351","title":"The Reactome pathway Knowledgebase","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6014,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; National Institutes of Health","keywords":"Visualization; Interface (matter); Computer science; Biology; Zoom; Data visualization; User interface; Computational biology; The Internet; Usability; Graph drawing; Information retrieval; Data mining; Bioinformatics; World Wide Web; Human–computer interaction; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002378152,0.004234882,0.00245097,0.009226067,0.001160514,0.004588627,0.004625079,0.002113975,0.06071742],"category_scores_gemma":[0.005658808,0.001728057,0.003621797,0.007393917,0.0005275561,0.002889545,0.003946736,0.002806957,0.04918854],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00139468,"about_ca_system_score_gemma":0.004529723,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004352516,"about_ca_topic_score_gemma":0.003325012,"domain_scores_codex":[0.9982367,0.0002691606,0.000265988,0.000497404,0.0005942197,0.0001366045],"domain_scores_gemma":[0.9978849,0.0005859256,0.0002637265,0.0005887273,0.0004745008,0.0002022129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001698057,0.0002903734,0.004144535,0.01782843,0.001482597,0.001678487,0.0003364075,0.04101627,0.02010646,0.06561261,0.619081,0.2267249],"study_design_scores_gemma":[0.0002181186,0.0000535987,0.001499299,0.0008670334,0.0004339171,0.0009155776,0.00007246013,0.01695453,0.01248386,0.04490224,0.9214441,0.0001552727],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.002967546,0.00721643,0.1404757,0.0008663809,0.0004533154,0.0006390607,0.7488145,0.07448345,0.02408365],"genre_scores_gemma":[0.01054196,0.006756383,0.07224125,0.0005303571,0.00008810997,0.00116194,0.8975129,0.005921734,0.005245443],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.06071742,"threshold_uncertainty_score":0.20312,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05227478967398648,"score_gpt":0.3313396891802437,"score_spread":0.2790648995062572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}