{"id":"W1989304390","doi":"10.5642/aliso.20072301.35","title":"Molecular Phylogenetics of Bromus (Poaceae: Pooideae) Based on Chloroplast and Nuclear DNA Sequence Data","year":2007,"lang":"en","type":"article","venue":"Aliso","topic":"Plant Taxonomy and Phylogenetics","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; Agriculture and Agri-Food Canada; Smithsonian Institution; University of British Columbia; U.S. Department of Agriculture; University of Alberta; National Science Foundation","keywords":"NdhF; Biology; Monophyly; Chloroplast DNA; Botany; Bromus; Ribosomal DNA; Ribosomal RNA; Genus; Subgenus; Phylogenetic tree; Evolutionary biology; Clade; Genetics; Poaceae; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002297454,0.0001131007,0.000127531,0.00001092402,0.00007236644,0.00002147691,0.0003428326,0.00008474387,0.00008391515],"category_scores_gemma":[0.00003848913,0.00005214031,0.00002542634,0.0001479331,0.0001053125,0.00003014111,0.0001132721,0.00007420035,0.000007146117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005603367,"about_ca_system_score_gemma":0.000007229261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001170099,"about_ca_topic_score_gemma":0.0001664545,"domain_scores_codex":[0.9991565,0.00003367873,0.0001649086,0.0002724524,0.0001614911,0.0002109192],"domain_scores_gemma":[0.9994621,0.0001821872,0.00007431917,0.0001586127,0.00002926842,0.00009355889],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005418636,0.00005794138,0.006065905,0.000008303692,0.00001064807,0.00002349317,0.00001578618,0.00003656996,0.9715579,0.0004194154,0.0002154679,0.02153435],"study_design_scores_gemma":[0.0007192538,0.001697848,0.2442446,0.0001153815,0.00008905774,0.00005629663,0.0002403374,0.006274256,0.3958336,0.00025949,0.3495571,0.0009127952],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976126,0.0001271869,0.00002449321,0.0002134478,0.00005085746,0.00009830122,0.000517432,0.00001661675,0.001339085],"genre_scores_gemma":[0.9985739,0.00006025023,0.0006181872,0.0005477346,0.00005898474,5.213312e-7,0.0001265194,0.000001208813,0.000012718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5757244,"threshold_uncertainty_score":0.212622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04180444309491348,"score_gpt":0.2307321988529505,"score_spread":0.188927755758037,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}