{"id":"W1989363553","doi":"10.1007/s10482-012-9759-2","title":"Molecular signatures for the phylum Synergistetes and some of its subclades","year":2012,"lang":"en","type":"review","venue":"Antonie van Leeuwenhoek","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phylogenetic tree; Phylum; Biology; Indel; Evolutionary biology; rpoB; Phylogenetics; Genome; Genetics; Gene; 16S ribosomal RNA; Single-nucleotide polymorphism","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002125799,0.00041305,0.0007936241,0.0000544142,0.000130635,0.00002590308,0.0003691175,0.0003066782,0.000005307855],"category_scores_gemma":[0.0000713306,0.0002739551,0.0004502896,0.00007047525,0.0001953839,0.000001435276,0.0002312435,0.0001310806,0.000002391916],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005716507,"about_ca_system_score_gemma":0.00009331427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005192899,"about_ca_topic_score_gemma":0.000004342427,"domain_scores_codex":[0.9986442,0.00007116045,0.0003885892,0.0004160297,0.0001081642,0.0003718364],"domain_scores_gemma":[0.998897,0.0001607477,0.0003188788,0.0004561867,0.00009567803,0.00007148153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003303817,0.0001064559,0.00002554096,0.01483015,0.002740881,0.000003299546,0.0001288066,0.00002003045,0.06258512,0.002889846,0.0009959202,0.9156409],"study_design_scores_gemma":[0.0001679464,0.0001652416,0.00002499397,0.0003591011,0.001029511,0.000009435956,0.0000273713,0.000004685788,0.00647887,0.0001177035,0.9912679,0.0003471929],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001650515,0.9967898,0.00004032875,0.00003350365,0.0002510786,0.000804394,0.0002607838,0.000003283231,0.0001662963],"genre_scores_gemma":[0.0293479,0.9694648,0.0001645252,0.00007400985,0.0003915228,0.0001656723,0.00008840427,0.00006868958,0.0002344314],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.990272,"threshold_uncertainty_score":0.9999713,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02887445288815085,"score_gpt":0.2912839448250696,"score_spread":0.2624094919369188,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}