{"id":"W1989446693","doi":"10.1128/jb.185.16.4973-4982.2003","title":"Genomic Profiling of Iron-Responsive Genes in <i>Salmonella enterica</i> Serovar Typhimurium by High-Throughput Screening of a Random Promoter Library","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":178,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Biology; Salmonella enterica; Gene; Regulon; Promoter; Genetics; Salmonella; Gene expression profiling; Ferritin; Gene expression; Computational biology; Bacteria; Biochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000276215,0.000463954,0.0003961299,0.000533584,0.0001294993,0.0004350622,0.0002223888,0.0002141902,0.0003462944],"category_scores_gemma":[0.0003515698,0.0002288769,0.0005687418,0.0003994257,0.0002130872,0.0001109675,0.0002596665,0.0004989633,0.0003683425],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002974462,"about_ca_system_score_gemma":0.0002872378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001034378,"about_ca_topic_score_gemma":0.001549001,"domain_scores_codex":[0.9996694,0.00006514215,0.00002595657,0.00007732452,0.00009698555,0.00006516738],"domain_scores_gemma":[0.9997132,0.0000835,0.00006757336,0.00003565831,0.00005312515,0.0000468022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005860935,0.00002189821,0.000439977,0.00002430086,0.000005953631,0.00001861459,0.00001527813,0.0001097036,0.9980748,0.00002074299,0.00002748453,0.001182597],"study_design_scores_gemma":[0.00002212994,0.0007589432,0.01962321,0.00001271684,0.00009109003,0.0004971709,0.0001038455,0.002968897,0.9737278,0.00006793346,0.002109515,0.00001673436],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.976044,0.0007026524,0.01935868,0.0001469093,0.0000150831,0.00007949996,0.002493789,0.0003858241,0.0007735381],"genre_scores_gemma":[0.9508012,0.001193299,0.03256085,0.0001786247,0.00001927777,0.0001441389,0.01169578,0.0001783381,0.003228512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001034378,"threshold_uncertainty_score":0.002158105,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006802504390411782,"score_gpt":0.2127975875425082,"score_spread":0.2059950831520964,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}