{"id":"W1989446693","doi":"10.1128/jb.185.16.4973-4982.2003","title":"Genomic Profiling of Iron-Responsive Genes in <i>Salmonella enterica</i> Serovar Typhimurium by High-Throughput Screening of a Random Promoter Library","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":178,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Biology; Salmonella enterica; Gene; Regulon; Promoter; Genetics; Salmonella; Gene expression profiling; Ferritin; Gene expression; Computational biology; Bacteria; Biochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003584193,0.0002062857,0.0006407555,0.0001633959,0.00002027181,0.000008799755,0.0003095221,0.000420849,0.00003624712],"category_scores_gemma":[0.00009116665,0.0001762171,0.0001630938,0.0001279822,0.000216512,0.00001200734,0.0001468796,0.000208474,8.599579e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009988277,"about_ca_system_score_gemma":0.0001550492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009175596,"about_ca_topic_score_gemma":0.000002024454,"domain_scores_codex":[0.9981145,0.0003271101,0.0009407934,0.0002578829,0.00008107123,0.0002786409],"domain_scores_gemma":[0.9986712,0.00003775746,0.0008531021,0.0002613986,0.0001146923,0.00006181273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001876792,0.0001257535,0.01251702,0.00004338722,0.0001024135,0.00001384168,0.00002900925,0.00004479045,0.9841504,0.00002814641,0.0001156974,0.0009528246],"study_design_scores_gemma":[0.00260144,0.00165419,0.005745372,0.00004335259,0.00003264671,0.0002050645,0.00005546264,0.00000708064,0.9828743,0.00007822501,0.00653956,0.0001633523],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962415,0.002244907,0.0007117251,0.0001998224,0.0003121692,0.0001946895,0.00005045013,0.000003349415,0.00004138083],"genre_scores_gemma":[0.9836134,0.001516127,0.01452453,0.00009808466,0.0001257652,0.00000416066,0.00004027929,0.00003139528,0.00004630942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0138128,"threshold_uncertainty_score":0.7185925,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006802504390411782,"score_gpt":0.2127975875425082,"score_spread":0.2059950831520964,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}