{"id":"W1989466077","doi":"10.1371/journal.pone.0075372","title":"Ubp2 Regulates Rsp5 Ubiquitination Activity In Vivo and In Vitro","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"University of Toronto","keywords":"Ubiquitin ligase; Ubiquitin; Deubiquitinating enzyme; In vivo; Cell biology; Chemistry; DNA ligase; Ubiquitin-Protein Ligases; Biology; Biochemistry; Enzyme; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002711254,0.0005090206,0.0003351366,0.0004030969,0.0003472377,0.0007188229,0.000324216,0.0003272612,0.001700831],"category_scores_gemma":[0.0002612466,0.0002613134,0.000322502,0.0002493747,0.0003047324,0.0003488739,0.0004579118,0.0004417714,0.0007809998],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007169088,"about_ca_system_score_gemma":0.0001877378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001551657,"about_ca_topic_score_gemma":0.001858583,"domain_scores_codex":[0.9996527,0.00007489679,0.00004289025,0.00008147481,0.00008752132,0.00006051789],"domain_scores_gemma":[0.999788,0.00005369842,0.00004645102,0.00003675797,0.00002573389,0.0000493837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001587039,0.00003089969,0.000353837,0.00004398471,0.000006709167,0.00007143653,0.00001810097,0.00007827853,0.9980386,0.0001148892,0.00008630665,0.0009982336],"study_design_scores_gemma":[0.000008370484,0.00005932192,0.005347315,0.000005213088,0.00001025905,0.0002241364,0.00003101094,0.00134074,0.9910066,0.00004038373,0.00192101,0.000005579434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860142,0.00590277,0.004712971,0.0001843864,0.00005942216,0.00002006222,0.0008396203,0.0001708308,0.0020957],"genre_scores_gemma":[0.9927738,0.00113517,0.001794242,0.00007030238,0.00002426862,0.00001918181,0.001631924,0.00004506807,0.002506021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001700831,"threshold_uncertainty_score":0.0056898,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01986434744453825,"score_gpt":0.2166616118691811,"score_spread":0.1967972644246428,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}