{"id":"W1989546207","doi":"10.1038/ncomms2957","title":"Persistent infection with Crohn’s disease-associated adherent-invasive Escherichia coli leads to chronic inflammation and intestinal fibrosis","year":2013,"lang":"en","type":"article","venue":"Nature Communications","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; Vertex Pharmaceuticals; McMaster University","keywords":"Escherichia coli; Crohn's disease; Immunology; Inflammation; Escherichia coli infection; Immunopathology; Fibrosis; Gastrointestinal tract; Inflammatory bowel disease; Microbiology; Biology; Proinflammatory cytokine; Medicine; Disease; Pathology; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002858039,0.0002615494,0.0003321062,0.0003326017,0.0002223218,0.0005599521,0.0001250021,0.0004668803,0.0009663721],"category_scores_gemma":[0.0005293677,0.0002482888,0.0003580214,0.000300476,0.0003482083,0.0002947148,0.0004610298,0.0009820861,0.000319939],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001548797,"about_ca_system_score_gemma":0.0001905928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000179228,"about_ca_topic_score_gemma":0.0003308134,"domain_scores_codex":[0.9996061,0.00008817891,0.0000357353,0.00004733359,0.00008565278,0.0001370407],"domain_scores_gemma":[0.9992689,0.000127635,0.0001986876,0.0001045921,0.00004575553,0.0002543466],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002059408,0.0004139216,0.02088422,0.00005690616,0.0000289128,0.00152135,0.00008076026,0.00004937647,0.969666,0.00009537626,0.0001688248,0.004974945],"study_design_scores_gemma":[0.0002783015,0.007027347,0.6785831,0.000057158,0.000150477,0.01572946,0.001253025,0.001743535,0.2918853,0.0005512344,0.00270788,0.00003315654],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991234,0.0003486046,0.0002041016,0.00005467522,0.00001458741,0.00000342099,0.00002992037,0.000005883361,0.0002155111],"genre_scores_gemma":[0.9988943,0.0002728876,0.0002884148,0.0000527697,0.00001655855,0.0000057149,0.00009890849,0.000004107794,0.0003663859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009663721,"threshold_uncertainty_score":0.003232837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0138176576567792,"score_gpt":0.2746578203751411,"score_spread":0.2608401627183619,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}