{"id":"W1989971013","doi":"10.3791/3961","title":"Detection of Bacteria Using Fluorogenic DNAzymes","year":2012,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Deoxyribozyme; Bacteria; Computational biology; Biology; Microbiology; Chemistry; DNA; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002486291,0.0001066058,0.0002149616,0.00008535421,0.00003575375,0.000007547391,0.0000871955,0.00009652993,0.000005033408],"category_scores_gemma":[0.00004298011,0.00008651726,0.0001883674,0.00008272491,0.00004407839,0.00001422206,0.00004127505,0.00005038647,4.071704e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002614083,"about_ca_system_score_gemma":0.00002397433,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003795234,"about_ca_topic_score_gemma":2.749575e-7,"domain_scores_codex":[0.99914,0.00007600414,0.00039157,0.00008002576,0.0001552023,0.0001572259],"domain_scores_gemma":[0.9991647,0.000004587635,0.0004811403,0.0001308277,0.0001428812,0.00007584673],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001824301,0.0001370893,0.000731893,0.000004768318,0.0001324801,6.10802e-7,0.00004819285,0.000001115647,0.9974819,0.000002764556,0.00002810308,0.00124863],"study_design_scores_gemma":[0.0004105667,0.0002581973,0.0002606409,0.00002305069,0.00005625182,0.00007554549,0.000115992,0.00001753681,0.9969587,0.00000694454,0.001724757,0.00009177282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885389,0.001825977,0.009371231,0.000003051441,0.0001871836,0.0000414125,0.000002030357,0.000004597669,0.00002566997],"genre_scores_gemma":[0.9838018,0.0001456179,0.01570281,0.00002879672,0.0002801414,5.854237e-7,0.000003631363,0.0000134347,0.00002323185],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006331577,"threshold_uncertainty_score":0.3528072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02767030946269961,"score_gpt":0.4167157944472703,"score_spread":0.3890454849845707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}