{"id":"W1990163755","doi":"10.1089/aid.2005.21.728","title":"Evidence for Host-Driven Selection of the HIV Type 1 <i>vpr</i> Gene <i>in Vivo</i> during HIV Disease Progression in a Transfusion-Acquired Cohort","year":2005,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Health and Medical Research Council","keywords":"Viral quasispecies; Biology; Gene; Virology; Human leukocyte antigen; Genetics; Amino acid; Genome; Antigen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004251788,0.0001827584,0.0001896576,0.0004952661,0.0004456579,0.0004707988,0.0002137236,0.0002995718,0.0008805849],"category_scores_gemma":[0.0009027756,0.000174923,0.0001395389,0.0002082167,0.0002770902,0.0002148056,0.0002535557,0.0004860552,0.0001940736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001304808,"about_ca_system_score_gemma":0.0001602312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001080725,"about_ca_topic_score_gemma":0.0008978436,"domain_scores_codex":[0.9998052,0.00005462098,0.00001423089,0.00004662681,0.00002532507,0.00005413713],"domain_scores_gemma":[0.9993011,0.0001344309,0.0001792043,0.00008501071,0.00006182969,0.0002385121],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001139741,0.0001885852,0.89605,0.00001793464,0.00003959876,0.001910471,0.0008831748,0.0001269503,0.09442363,0.0001169352,0.00009280747,0.005010144],"study_design_scores_gemma":[0.00001938117,0.001262443,0.9853597,0.000005623108,0.00004009912,0.005031649,0.0004877746,0.0004300431,0.006857905,0.00005030958,0.0004431292,0.00001192952],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997632,0.0000359983,0.00003845808,0.000008626171,0.000001005996,0.00000254122,0.0000234529,0.000001494465,0.0001253607],"genre_scores_gemma":[0.9996917,0.00003865064,0.00005136562,0.00001081444,0.000004308726,0.000002897245,0.00006701743,0.000001742569,0.0001315197],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001080725,"threshold_uncertainty_score":0.0029459,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0607566353442933,"score_gpt":0.362200241120772,"score_spread":0.3014436057764787,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}