{"id":"W1990163755","doi":"10.1089/aid.2005.21.728","title":"Evidence for Host-Driven Selection of the HIV Type 1 <i>vpr</i> Gene <i>in Vivo</i> during HIV Disease Progression in a Transfusion-Acquired Cohort","year":2005,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Health and Medical Research Council","keywords":"Viral quasispecies; Biology; Gene; Virology; Human leukocyte antigen; Genetics; Amino acid; Genome; Antigen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006420607,0.0001428768,0.0002392441,0.000305128,0.0004353408,0.00002842061,0.0002497215,0.0001098492,0.0002708168],"category_scores_gemma":[0.0002953319,0.0001005215,0.00006856642,0.0004421167,0.0004574003,0.000188513,0.0001255122,0.0002809287,0.00003789846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001591313,"about_ca_system_score_gemma":0.0001997375,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002340661,"about_ca_topic_score_gemma":0.001077737,"domain_scores_codex":[0.9980724,0.0004073089,0.0002913323,0.0003989414,0.0001860655,0.0006438776],"domain_scores_gemma":[0.9991323,0.0003016568,0.00004841642,0.0002652816,0.0001687028,0.00008367772],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001528988,0.0002635602,0.5775575,0.00006460339,0.00003017379,0.000004760173,0.0001491406,0.000003366127,0.4193192,0.00005612533,0.0005344067,0.0004882175],"study_design_scores_gemma":[0.002435881,0.001083494,0.7116194,0.0004378762,0.00001531871,0.000005186522,0.0000584581,0.000004974603,0.2823743,0.00004723859,0.001807345,0.0001105292],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947539,0.00329545,0.000004801967,0.0003046605,0.00002958059,0.001379612,0.0001216839,0.0000180566,0.0000922757],"genre_scores_gemma":[0.9961539,0.001583991,0.00007719292,0.00001805636,0.00004038142,0.0003070049,0.0000325566,0.00001675578,0.001770178],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1369449,"threshold_uncertainty_score":0.4099148,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0607566353442933,"score_gpt":0.362200241120772,"score_spread":0.3014436057764787,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}