{"id":"W1990609531","doi":"10.1089/aid.2004.20.1100","title":"HIV Type 1 BF Recombinant Strains Exhibit Different pol Gene Mosaic Patterns: Descriptive Analysis from 284 Patients under Treatment Failure","year":2004,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver","funders":"","keywords":"Recombinant DNA; Virology; Biology; Human immunodeficiency virus (HIV); Gene; Virus; Mosaic; Recombinant virus; Genetics; Medicine; History","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002018765,0.0003962133,0.0006216051,0.000724233,0.0008765741,0.000155582,0.0003109246,0.0002512614,0.001734548],"category_scores_gemma":[0.00005781916,0.0002804821,0.0002051074,0.0005024415,0.0005263483,0.0001618751,0.0002249083,0.0005194402,0.0007814954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008164558,"about_ca_system_score_gemma":0.000161894,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009559499,"about_ca_topic_score_gemma":0.007840431,"domain_scores_codex":[0.9968072,0.0005021662,0.0003729511,0.0008356558,0.0002863989,0.001195627],"domain_scores_gemma":[0.9985937,0.0001666302,0.00008150496,0.0006137557,0.0002946274,0.0002497262],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004639897,0.003189149,0.9549509,0.00001734446,0.007119605,0.00008400365,0.001516907,0.000005603066,0.0274035,0.00119082,0.001260416,0.002797744],"study_design_scores_gemma":[0.008091739,0.01201291,0.9343408,0.0000650023,0.0004249036,0.000003302076,0.001839091,2.416959e-7,0.03832716,0.002767917,0.00172373,0.0004031841],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957463,0.001305894,0.00006420708,0.0001577783,0.00009243413,0.0006139042,0.001845694,0.00005718459,0.0001165893],"genre_scores_gemma":[0.9918939,0.0007949945,0.00006326268,0.00003143212,0.00004623296,0.0001103219,0.004797229,0.00003524769,0.002227374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0206101,"threshold_uncertainty_score":0.9999965,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06432744541869294,"score_gpt":0.3214889812912446,"score_spread":0.2571615358725517,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}