{"id":"W1990626904","doi":"10.1371/journal.pgen.1002600","title":"Critical Evaluation of Imprinted Gene Expression by RNA–Seq: A New Perspective","year":2012,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":230,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genomic imprinting; Genetics; Allele; Gene; Computational biology; False positive paradox; Concordance; RNA-Seq; Transcriptome; Pyrosequencing; Gene expression; DNA methylation; Statistics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01693075,0.001045759,0.001701115,0.0009329186,0.0004937897,0.002460947,0.001356715,0.00079837,0.0008563644],"category_scores_gemma":[0.01753477,0.0005209007,0.0006720223,0.0007565211,0.002221528,0.002268421,0.001145029,0.002553922,0.000255852],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008242897,"about_ca_system_score_gemma":0.0008826762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007763011,"about_ca_topic_score_gemma":0.001802117,"domain_scores_codex":[0.9950563,0.002064334,0.0003052195,0.0008326077,0.00161685,0.000124695],"domain_scores_gemma":[0.9827786,0.0110816,0.0007912764,0.002770544,0.002260302,0.0003177155],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004327864,0.0001737412,0.01306228,0.001133065,0.0004816437,0.0003519613,0.0009477467,0.01422245,0.8359687,0.0193739,0.001640408,0.1122113],"study_design_scores_gemma":[0.00005577144,0.001070246,0.05247729,0.0004375283,0.0004375954,0.001171048,0.001032153,0.2253588,0.5985464,0.08618715,0.03281365,0.0004123979],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.09639478,0.007867303,0.8890219,0.002547518,0.0007343297,0.0001870332,0.0008295921,0.0006555664,0.001762056],"genre_scores_gemma":[0.4968912,0.007486414,0.4884849,0.002607478,0.0008632623,0.0004677126,0.0008552889,0.0006878498,0.001655861],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01693075,"threshold_uncertainty_score":0.08953941,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03333032953320142,"score_gpt":0.3172731554300056,"score_spread":0.2839428258968042,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}