{"id":"W1990943398","doi":"10.1021/bi0346650","title":"Effects of Photosynthetic Reaction Center H Protein Domain Mutations on Photosynthetic Properties and Reaction Center Assembly in<i>Rhodobacter sphaeroides</i>","year":2003,"lang":"en","type":"article","venue":"Biochemistry","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"ExxonMobil (Canada); University of British Columbia","funders":"","keywords":"Rhodobacter sphaeroides; Photosynthetic reaction centre; Photosynthesis; Chemistry; Rhodospirillaceae; Center (category theory); Photochemistry; Domain (mathematical analysis); Rhodospirillales; PAS domain; Biophysics; Biochemistry; Crystallography; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002106107,0.0002932336,0.0002473302,0.00006842633,0.00006990116,0.00002387673,0.0001273154,0.0002630939,0.00000650645],"category_scores_gemma":[0.0002422429,0.0002689995,0.00009446478,0.0001095852,0.0001110266,0.00001297129,0.00004528649,0.0001635431,0.000005252124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005006215,"about_ca_system_score_gemma":0.00008788121,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002157811,"about_ca_topic_score_gemma":0.000009504635,"domain_scores_codex":[0.9984826,0.00009417813,0.000339107,0.0005544606,0.0001937829,0.0003358138],"domain_scores_gemma":[0.9992506,0.00002230881,0.0001837949,0.0003588827,0.0000746294,0.0001097809],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002314721,0.0004976378,0.00007227869,0.0003935086,0.00002948551,0.000006073064,0.00005991913,4.613565e-7,0.9983321,0.00003414727,0.00001170955,0.0003311793],"study_design_scores_gemma":[0.001243626,0.0002219108,0.0001093757,0.0004374741,0.00002220103,0.00008616844,0.0001399767,0.000006510747,0.9953216,0.0001681592,0.001962935,0.0002800123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971496,0.0001830885,0.00008049638,0.00004786624,0.0001152126,0.0006158154,0.00002213071,0.00001923338,0.001766534],"genre_scores_gemma":[0.9988901,0.0001203065,0.0002167733,0.00009663971,0.00004334842,0.0002109045,0.00004719015,0.00004205806,0.0003326606],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003010477,"threshold_uncertainty_score":0.9999762,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00761487053509949,"score_gpt":0.2082817287060298,"score_spread":0.2006668581709304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}